LOCUS BC013325 1507 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens hepatitis A virus cellular receptor 1, mRNA (cDNA
clone MGC:13455 IMAGE:3826378), complete cds.
ACCESSION BC013325
VERSION BC013325.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1507)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1507)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912407.
FEATURES Location/Qualifiers
source 1..1507
/db_xref="H-InvDB:HIT000036214"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13455 IMAGE:3826378"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_58"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1507
/gene="HAVCR1"
/gene_synonym="HAVCR"
/gene_synonym="HAVCR-1"
/gene_synonym="KIM-1"
/gene_synonym="KIM1"
/gene_synonym="TIM-1"
/gene_synonym="TIM1"
/gene_synonym="TIMD1"
/db_xref="GeneID:26762"
/db_xref="MIM:606518"
CDS 169..1263
/gene="HAVCR1"
/gene_synonym="HAVCR"
/gene_synonym="HAVCR-1"
/gene_synonym="KIM-1"
/gene_synonym="KIM1"
/gene_synonym="TIM-1"
/gene_synonym="TIM1"
/gene_synonym="TIMD1"
/codon_start=1
/product="HAVCR1 protein"
/protein_id="AAH13325.1"
/db_xref="GeneID:26762"
/db_xref="MIM:606518"
/translation="MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSGAVTS
MCWNRGSCSLFTCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGV
YCCRVEHRGWFNDMKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTT
VPTTTVPTTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLP
RQNHEPVATSPSSPQPAETHPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNN
NQTQLFLEHSLLTANTTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSS
LQIKALQNAVEKEVQAEDNIYIENSLYATD"
misc_feature 259..489
/gene="HAVCR1"
/gene_synonym="HAVCR"
/gene_synonym="HAVCR-1"
/gene_synonym="KIM-1"
/gene_synonym="KIM1"
/gene_synonym="TIM-1"
/gene_synonym="TIM1"
/gene_synonym="TIMD1"
/note="IGv; Region: Immunoglobulin V-Type"
/db_xref="CDD:smart00406"
BASE COUNT 452 a 369 c 300 g 386 t
ORIGIN
1 gggcgttata tgtggtcttc tctcatttcc agcagagcag gctcatatga atcaaccaac
61 tgggtgaaaa gataagttgc aatctgagat ttaagacttg atcagatacc atctggtgga
121 gggtaccaac cagcctgtct gctcattttc cttcaggctg atcccataat gcatcctcaa
181 gtggtcatct taagcctcat cctacatctg gcagattctg tagctggttc tgtaaaggtt
241 ggtggagagg caggtccatc tgtcacacta ccctgccact acagtggagc tgtcacatcc
301 atgtgctgga atagaggctc atgttctcta ttcacatgcc aaaatggcat tgtctggacc
361 aatggaaccc acgtcaccta tcggaaggac acacgctata agctattggg ggacctttca
421 agaagggatg tctctttgac catagaaaat acagctgtgt ctgacagtgg cgtatattgt
481 tgccgtgttg agcaccgtgg gtggttcaat gacatgaaaa tcaccgtatc attggagatt
541 gtgccaccca aggtcacgac tactccaatt gtcacaactg ttccaaccgt cacgactgtt
601 cgaacgagca ccactgttcc aacgacaacg actgttccaa tgacgactgt tccaacgaca
661 actgttccaa caacaatgag cattccaacg acaacgactg ttctgacgac aatgactgtt
721 tcaacgacaa cgagcgttcc aacgacaacg agcattccaa caacaacaag tgttccagtg
781 acaacaactg tctctacctt tgttcctcca atgcctttgc ccaggcagaa ccatgaacca
841 gtagccactt caccatcttc acctcagcca gcagaaaccc accctacgac actgcaggga
901 gcaataagga gagaacccac cagctcacca ttgtactctt acacaacaga tgggaatgac
961 accgtgacag agtcttcaga tggcctttgg aataacaatc aaactcaact gttcctagaa
1021 catagtctac tgacggccaa taccactaaa ggaatctatg ctggagtctg tatttctgtc
1081 ttggtgcttc ttgctctttt gggtgtcatc attgccaaaa agtatttctt caaaaaggag
1141 gttcaacaac taagtgtttc atttagcagc cttcaaatta aagctttgca aaatgcagtt
1201 gaaaaggaag tccaagcaga agacaatatc tacattgaga atagtcttta tgccacggac
1261 taagacccag tggtgctctt tgagagttta cgcccatgag tgcagaagac tgaacagaca
1321 tcagcacatc agacgtcttt tagaccccaa gacaattttt ctgtttcagt ttcatctggc
1381 attccaacat gtcagtgata ctgggtagag taactctctc actccaaact gtgtatagtc
1441 aacctcatca ttaatgtagt cctaattttt tatgctgaaa aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaa
//