LOCUS BC013293 1208 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synuclein, alpha (non A4 component of amyloid
precursor), mRNA (cDNA clone MGC:3484 IMAGE:3604532), complete cds.
ACCESSION BC013293
VERSION BC013293.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1208)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1208)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC013293.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: l Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6806897.
FEATURES Location/Qualifiers
source 1..1208
/db_xref="H-InvDB:HIT000036190"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3484 IMAGE:3604532"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1208
/gene="SNCA"
/gene_synonym="NACP"
/gene_synonym="PARK4"
/gene_synonym="PD1"
/db_xref="GeneID:6622"
/db_xref="HGNC:HGNC:11138"
/db_xref="MIM:163890"
CDS 424..846
/gene="SNCA"
/gene_synonym="NACP"
/gene_synonym="PARK4"
/gene_synonym="PD1"
/codon_start=1
/product="synuclein, alpha (non A4 component of amyloid
precursor)"
/protein_id="AAH13293.1"
/db_xref="GeneID:6622"
/db_xref="HGNC:HGNC:11138"
/db_xref="MIM:163890"
/translation="MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKT
KEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK
NEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA"
BASE COUNT 327 a 272 c 328 g 281 t
ORIGIN
1 agagaggggg cgagcgaccg agcgccgcga cgcggaagtg aggtgcgtgc gggctgcagc
61 gcagaccccg gcccggcccc tccgagagcg tcctgggcgc tccctcacgc cttgccttca
121 agccttctgc ctttccaccc tcgtgagcgg agaactggga gtggccattc gacgacaggt
181 tagcgggttt gcctcccact cccccagcct cgcgtcgccg gctcacagcg gcctcctctg
241 gggacagtcc cccccgggtg ccgcctccgc ccttcctgtg cgctcctttt ccttcttctt
301 tcctattaaa tattatttgg gaattgttta aatttttttt ttaaaaaaaa gagagaggcg
361 gggaggagtc ggagttgtgg agaagcagag ggactcagtg tggtgtaaag gaattcatta
421 gccatggatg tattcatgaa aggactttca aaggccaagg agggagttgt ggctgctgct
481 gagaaaacca aacagggtgt ggcagaagca gcaggaaaga caaaagaggg tgttctctat
541 gtaggctcca aaaccaagga gggagtggtg catggtgtgg caacagtggc tgagaagacc
601 aaagagcaag tgacaaatgt tggaggagca gtggtgacgg gtgtgacagc agtagcccag
661 aagacagtgg agggagcagg gagcattgca gcagccactg gctttgtcaa aaaggaccag
721 ttgggcaaga atgaagaagg agccccacag gaaggaattc tggaagatat gcctgtggat
781 cctgacaatg aggcttatga aatgccttct gaggaagggt atcaagacta cgaacctgaa
841 gcctaagaaa tatctttgct cccagtttct tgagatctgc tgacagatgt tccatcctgt
901 acaagtgctc agttccaatg tgcccagtca tgacatttct caaagttttt acagtgtatc
961 tcgaagtctt ccatcagcag tgattgaagt atctgtacct gcccccactc agcatttcgg
1021 tgcttccctt tcactgaagt gaatacatgg tagcagggtc tttgtgtgct gtggattttg
1081 tggcttcaat ctacgatgtt aaaacaaatt aaaaacacct aagtgactac cacttatttc
1141 taaatcctca ctattttttg ttgctgttga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaaaaa
//