LOCUS BC013187 1542 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens major histocompatibility complex, class I, B, mRNA
(cDNA clone MGC:17189 IMAGE:4344323), complete cds.
ACCESSION BC013187
VERSION BC013187.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1542)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1542)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: l Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21327676.
FEATURES Location/Qualifiers
source 1..1542
/db_xref="H-InvDB:HIT000036172"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17189 IMAGE:4344323"
/tissue_type="Adrenal cortex, carcinoma"
/clone_lib="NIH_MGC_84"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1542
/gene="HLA-B"
/db_xref="GeneID:3106"
/db_xref="MIM:142830"
CDS 10..1098
/gene="HLA-B"
/codon_start=1
/product="HLA-B protein"
/protein_id="AAH13187.1"
/db_xref="GeneID:3106"
/db_xref="MIM:142830"
/translation="MRVTAPRTVLLLLSGALALTETWAGSHSMRYFYTAMSRPGRGEP
RFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQICKTNTQTYRESL
RNLRGYYNQSEAGSHTLQRMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLSSWTAA
DTAAQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPI
SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSG
EEQRYTCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRR
KSSGGKGGSYSQAASSDSAQGSDVSLTA"
misc_feature 82..618
/gene="HLA-B"
/note="MHC_I; Region: Class I Histocompatibility antigen,
domains alpha 1 and 2"
/db_xref="CDD:pfam00129"
misc_feature 673..888
/gene="HLA-B"
/note="IGc1; Region: Immunoglobulin C-Type"
/db_xref="CDD:smart00407"
BASE COUNT 347 a 437 c 457 g 301 t
ORIGIN
1 gacgccgaga tgcgggtcac ggcgccccga accgtcctcc tgctgctctc gggagccctg
61 gccctgaccg agacctgggc cggctcccac tccatgaggt atttctacac cgccatgtcc
121 cggcccggcc gcggggagcc ccgcttcatc tcagtgggct acgtggacga cacgcagttc
181 gtgaggttcg acagcgacgc cgcgagtccg agagaggagc cgcgggcgcc gtggatagag
241 caggaggggc cggagtattg ggaccggaac acacagatct gcaagaccaa cacacagact
301 taccgagaga gcctgcggaa cctgcgcggc tactacaacc agagcgaggc cgggtctcac
361 accctccaga ggatgtacgg ctgcgacgtg gggccggacg ggcgcctcct ccgcgggcat
421 gaccagtacg cctacgacgg caaggattac atcgccctga acgaggacct gagctcctgg
481 accgcggcgg acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgaggcg
541 gagcagctga gagcctacct ggagggcctg tgcgtggagt ggctccgcag atacctggag
601 aacgggaagg agacgctgca gcgcgcggac cccccaaaga cacatgtgac ccaccacccc
661 atctctgacc atgaggccac cctgaggtgc tgggccctgg gcttctaccc tgcggagatc
721 acactgacct ggcagcggga tggcgaggac caaactcagg acaccgagct tgtggagacc
781 agaccagcag gagatagaac cttccagaag tgggcagctg tggtggtgcc ttctggagaa
841 gagcagagat acacatgcca tgtacagcat gaggggctgc cgaagcccct caccctgaga
901 tgggagccat cttcccagtc caccatcccc atcgtgggca ttgttgctgg cctggctgtc
961 ctagcagttg tggtcatcgg agctgtggtc gctactgtga tgtgtaggag gaagagctca
1021 ggtggaaaag gagggagcta ctctcaggct gcgtccagcg acagtgccca gggctctgat
1081 gtgtctctca cagcttgaaa agcctgagac agctgtcttg tgagggactg agatgcagga
1141 tttcttcacg cctccccttt gtgacttcaa gagcctctgg catctctttc tgcaaaggca
1201 cctgaatgtg tctgcgtccc tgttagcata atgtgaggag gtggagagac agcccaccct
1261 tgtgtccact gtgacccctg ttcccatgct gatctgtgtt tcctccccag tcatctttct
1321 tgttccagag aggtggggct ggatgtctcc atctctgtct caactttatg tgcactgagc
1381 tgcaacttct tacttcccta ctgaaaataa gaatctgaat ataaatttgt tttctcaaat
1441 atttgctatg agaggttgat ggattaatta aataagtcaa ttcctggaat ttgaaagagc
1501 aaataaagac ctgagaacct tccagaaaaa aaaaaaaaaa aa
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