LOCUS BC013101 1607 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 42, mRNA (cDNA clone
MGC:8974 IMAGE:3918785), complete cds.
ACCESSION BC013101
VERSION BC013101.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1607)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1607)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: b Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543202.
FEATURES Location/Qualifiers
source 1..1607
/db_xref="H-InvDB:HIT000036120"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8974 IMAGE:3918785"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1607
/gene="LRRC42"
/gene_synonym="dJ167A19.4"
/gene_synonym="MGC8974"
/db_xref="GeneID:115353"
/db_xref="HGNC:HGNC:28792"
CDS 78..1364
/gene="LRRC42"
/gene_synonym="dJ167A19.4"
/gene_synonym="MGC8974"
/codon_start=1
/product="leucine rich repeat containing 42"
/protein_id="AAH13101.1"
/db_xref="GeneID:115353"
/db_xref="HGNC:HGNC:28792"
/translation="MSYYLSSENHLDPGPIYMRENGQLHMVNLALDGVRSSLQKPRPF
RLFPKGFSVELCMNREDDTARKEKTDHFIFTYTREGNLRYSAKSLFSLVLGFISDNVD
HIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQKFTEAYGSLVLCSLCLRNRYL
VISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEALSSVTQLHLKDNCLSDAGV
RKMTAPVRVMKRGLENLTLLDLSCNPEITDAGIGYLFSFRKLNCLDISGTGLKDIKTV
KHKLQTHIGLVHSKVPLKEFDHSNCKTEGWADQIVLQWERVTAEAVKPRETSEPRAAA
QRFYGKRSRAEAPLKCPLADTHMNSSEKLQFYKEKAPDCHGPVLKHEAISSQESKKSK
KRPFEESETEQNNSSQPSKQKYVCLAVEDWDLLNSY"
BASE COUNT 446 a 359 c 398 g 404 t
ORIGIN
1 ggccgcggga ggagggagcc gtcaccgagg agctgccgct cgctgccccg ggcaggggca
61 cagttgcaac caaggcaatg tcttactacc tcagctcaga aaaccacctg gacccagggc
121 ccatctacat gcgagaaaat gggcagctgc acatggtcaa tctggctctg gatggtgtca
181 ggagtagcct gcagaagcca aggcctttca gactgttccc caaaggcttt tctgtggagc
241 tttgcatgaa cagggaagac gacactgcac ggaaagagaa gactgatcat ttcatcttca
301 catacacccg agaggggaat cttcggtact ccgccaaatc cctcttcagc cttgtcctgg
361 gtttcatctc cgacaatgtg gatcacattg attcccttat tggctttcct gagcagattg
421 ctgaaaagct gttctctgct gctgaagcca gacagaaatt cactgagcca ggtgcagggc
481 tgagggcttt acagaaattc actgaggcct atggaagttt ggtgctttgc tccctgtgtt
541 tgcgaaacag gtatctcgtg atttcagaaa agcttgagga gattaagtct ttccgggagc
601 tgacctgcct ggatctttcc tgttgcaagc ttggagatga gcatgaactt ctagaacatc
661 tcaccaatga agccctgtct agtgtaactc agctccacct gaaggataat tgtttatctg
721 atgctggggt gcggaagatg acagcaccag ttcgagtgat gaaaagaggc cttgagaatc
781 taacattatt agacttatca tgtaaccctg agatcacaga tgcaggcatt ggatacctct
841 tttcttttag gaaactaaac tgcttagata tctctgggac agggctcaag gacatcaaaa
901 ccgtcaagca caagctccag acccacatag gccttgttca ctccaaagtg cctttgaagg
961 aatttgatca tagtaactgc aagacagagg gctgggctga ccagatcgtt ctgcagtggg
1021 agcgtgtgac tgcggaagct gtgaagccac gggagacctc ggagcctaga gcagcagctc
1081 agcgcttcta tgggaagcgg tctcgagcag aagccccact gaagtgtccc ctggcagaca
1141 cccacatgaa ctcttccgag aaactccagt tctataaaga gaaagcccca gattgccatg
1201 ggccagtgtt gaaacacgaa gctatctcaa gccaggagtc aaagaagagc aagaagagac
1261 cttttgagga gtcagagaca gaacagaata actcttcaca accttcaaag cagaaatatg
1321 tatgtcttgc tgtggaagac tgggacttgt taaattccta ttgattagta gatacaagtt
1381 gacctttctc tggcccccag ctctagtgtt tgagtaaagg agactgagga tgatttactt
1441 tttgtttgaa tttacctatg gcattagcat agtaagcaga tatttctact tttgtggtgt
1501 gggaggggaa tgctatggaa gtatgtaata atttctaatg tatattttca atacatagta
1561 attttttcaa ataaacattt ttgctgtcct taaaaaaaaa aaaaaaa
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