LOCUS BC012982 2648 bp mRNA linear HUM 25-MAR-2004
DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 19, mRNA
(cDNA clone IMAGE:3622495), partial cds.
ACCESSION BC012982
VERSION BC012982.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2648)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2648)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC012982.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: g Column: 17.
FEATURES Location/Qualifiers
source 1..2648
/db_xref="H-InvDB:HIT000087978"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3622495"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2648
/gene="ARHGEF19"
/gene_synonym="FLJ33962"
/db_xref="GeneID:128272"
CDS <1..2122
/gene="ARHGEF19"
/gene_synonym="FLJ33962"
/codon_start=2
/product="ARHGEF19 protein"
/protein_id="AAH12982.1"
/db_xref="GeneID:128272"
/translation="SRAGSWPHCPGAQPPALEGPWSPRHTQPQRRASHGSEKKSAWRK
MRVYQREEVPGCPEAHAVFLEPGQVVQEQALSTEEPRVELSGSTRVSLEGPERRRFSA
SELMTRLHSSLRLGRNSAARALISGSGTGAAREGKASGMEARSVEMSGDRVSRPAPGD
SREGDWSEPRLDTQEEPPLGSRSTNERRQSRFLLNSVLYQEYSDVASARELRRQQREE
EGPGDEAEGAEEGPGPPRANLSPSSSFRAQRSARGSTFSLWQDIPDVRGSGVLATLSL
RDCKLQEAKFELITSEASYIHSLSVAVGHFLGSAELSECLGAQDKQWLFSKLPEVKST
SERFLQDLEQRLEADVLRFSVCDVVLDHCPAFRRVYLPYVTNQAYQERTYQRLLLENP
RFPGILARLEESPVCQRLPLTSFLILPFQRITRLKMLVENILKRTAQGSEDEDMATKA
FNALKELVQECNASVQSMKRTEELIHLSKKIHFEGKIFPLISQARWLVRHGELVELAP
LPAAPPAKLKLSSKAVYLHLFNDCLLLSRRKELGKFAVFVHAKMAELQVRDLSLKLQG
IPGHVFLLQLLHGQHMKHQFLLRARTESEKQRWISALCPSSPQEDKEVISEGEDCPQV
QCVRTYKALHPDELTLEKTDILSVRTWTSDGWLEGVRLADGEKGWVPQAYVEEISSLS
ARLRNLRENKRVTSATSKLGEAPV"
misc_feature 857..1390
/gene="ARHGEF19"
/gene_synonym="FLJ33962"
/note="RhoGEF; Region: Guanine nucleotide exchange factor
for Rho/Rac/Cdc42-like GTPases"
/db_xref="CDD:smart00325"
misc_feature 1571..1813
/gene="ARHGEF19"
/gene_synonym="FLJ33962"
/note="PH; Region: PH domain. PH stands for pleckstrin
homology"
/db_xref="CDD:pfam00169"
misc_feature 1859..2035
/gene="ARHGEF19"
/gene_synonym="FLJ33962"
/note="SH3; Region: Src homology 3 domains"
/db_xref="CDD:smart00326"
BASE COUNT 540 a 795 c 824 g 489 t
ORIGIN
1 cagcagggct ggcagctggc cacactgtcc tggtgcccag cccccagctc tggagggacc
61 ctggagtccc cgacacacac agccacagcg ccgggccagc cacggctcgg agaagaagtc
121 tgcctggcgc aagatgcggg tgtaccagcg tgaagaggtc cccggctgcc ccgaggccca
181 cgctgtcttc ctagagcctg gccaggtagt gcaagagcag gccctgagca cagaggagcc
241 cagggtggag ttgtctgggt ccacccgagt gagcctcgaa ggtcctgagc ggaggcgctt
301 ctcggcatcg gagctgatga cccggctgca ctcttctctg cgcctggggc ggaattcagc
361 agcccgggca ctcatctctg ggtcaggcac cggagcagcc cgggaaggga aagcatctgg
421 aatggaggct cgaagtgtag agatgagcgg ggaccgggtg tcgcggccag cccctggtga
481 ctcacgagag ggcgattggt ccgagcccag gctagacaca caggaagagc cgcctttggg
541 gtccaggagc accaacgagc ggcgccagtc tcgattcctc cttaactccg tcctctatca
601 ggaatacagc gacgtggcca gcgcccgcga actgcggcgg cagcagcgcg aggaggaggg
661 cccgggggac gaggccgagg gcgcagagga ggggccgggg ccgccgcggg ccaacctctc
721 ccccagcagc tccttccggg cgcagcgctc ggcgcgaggc tccaccttct cgctgtggca
781 ggatatcccc gacgtacgcg gcagcggcgt cctggccacg ctgagcctgc gggactgcaa
841 gctgcaggag gccaagtttg agctgatcac ctccgaggcc tcctacatcc acagcctgtc
901 ggtggctgtg ggccacttct taggctctgc cgagctgagc gagtgtctgg gggcgcagga
961 caagcagtgg ctgttttcca aactgcccga ggtcaagagc accagcgaga ggttcctgca
1021 ggacctggag cagcggctgg aggcagatgt gctgcgcttc agcgtgtgcg acgtggtgct
1081 ggaccactgc ccggccttcc gcagagtcta cctgccctat gtcaccaacc aggcctacca
1141 ggagcgcacc taccagcgcc tgctcctgga gaaccccagg ttccctggca tcctggctcg
1201 cctggaggag tctcctgtgt gccagcgtct gccccttacc tccttcctta tcctgccctt
1261 ccagaggatc acccgcctca agatgttggt ggagaacatc ttgaagcgga cagcacaggg
1321 ctctgaagac gaagacatgg ccaccaaggc cttcaatgcg ctcaaggagc tggtgcagga
1381 gtgcaatgct agtgtacagt ccatgaagag gacagaggaa ctcatccacc tgagcaagaa
1441 gatccacttt gagggcaaga ttttcccgct gatctctcag gcccgctggc tggttcggca
1501 tggagagttg gtagagctgg caccactgcc tgcagcaccc cctgccaagc tgaagctgtc
1561 cagcaaggca gtctacctcc acctcttcaa tgactgcttg ctgctctctc ggcggaagga
1621 gctagggaag tttgccgttt tcgtccatgc caagatggct gagctgcagg tgcgggacct
1681 gagcctgaag ctgcagggca tccccggcca cgtgttcctc ctccagctcc tccacgggca
1741 gcacatgaag caccagttcc tgctgcgggc ccggacggaa agtgagaagc agcgatggat
1801 ctcagccttg tgcccctcca gcccccagga ggacaaggag gtcatcagtg agggggaaga
1861 ttgcccccag gttcagtgtg ttaggacata caaggcactg cacccagatg agctgacctt
1921 ggagaagact gacatcctgt cagtgaggac ctggaccagt gacggctggc tggaaggggt
1981 ccgcctggca gatggtgaga aggggtgggt gccccaggcc tatgtggaag agatcagcag
2041 cctcagcgcc cgcctccgaa acctccggga gaataagcga gtcacaagtg ccaccagcaa
2101 actgggggag gctcctgtgt gatgggcagc catggcctag gaccccacct ccatgcctgg
2161 ctcctggatg gtcctggagg ggcctgcagt gtctccattc cccaagctgc tcctgctggc
2221 acttcgcttc tgtggccttg gcattgaggg cacaggctgg acacaggaat gggggcgcct
2281 ccagagggtc tctccgtcct catgctcctc agtgtccaca cttcaaggcc aaggatagtt
2341 tcttcctctg acatggggac cataacaggt gatcactgat acctggcaaa gactggggcc
2401 ctctcctttc tatgtcctca atcctgcctg actcttggtc cttctggcag ggacctggct
2461 ggggaacgtt ctggtgctga tggtgctggg acctatatgt atatttatat atatctgggg
2521 tcttgtctac cacctcccct ggtcagagcc tgagtgggtg ctggttgctg tgtcttgtct
2581 gtaaataaac tcctatcatg cctttgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2641 aaaaaaaa
//