LOCUS BC012932 2310 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 45 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:9230 IMAGE:3853152), complete cds.
ACCESSION BC012932
VERSION BC012932.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2310)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2310)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: a Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18105062.
FEATURES Location/Qualifiers
source 1..2310
/db_xref="H-InvDB:HIT000036043"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9230 IMAGE:3853152"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2310
/gene="VPS45"
/gene_synonym="H1"
/gene_synonym="H1VPS45"
/gene_synonym="VPS54A"
/gene_synonym="VSP45"
/gene_synonym="VSP45A"
/db_xref="GeneID:11311"
/db_xref="HGNC:HGNC:14579"
/db_xref="MIM:610035"
CDS 52..1764
/gene="VPS45"
/gene_synonym="H1"
/gene_synonym="H1VPS45"
/gene_synonym="VPS54A"
/gene_synonym="VSP45"
/gene_synonym="VSP45A"
/codon_start=1
/product="vacuolar protein sorting 45 homolog (S.
cerevisiae)"
/protein_id="AAH12932.1"
/db_xref="GeneID:11311"
/db_xref="HGNC:HGNC:14579"
/db_xref="MIM:610035"
/translation="MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEI
LQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVI
SKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQ
GLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDR
CDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNM
YLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTV
VGELSRLVSERNLLEVSEVEQELACQNDHSSALQNIKRLLQNPKVTEFDAARLVMLYA
LHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITK
QFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIG
GATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRS
ASRR"
BASE COUNT 694 a 480 c 525 g 611 t
ORIGIN
1 agccagaaaa gggggcggga agggctgtag ggtacttgtc aattcgccgc catgaacgtg
61 gtttttgctg tgaagcagta catttccaaa atgatagagg acagcgggcc tggtatgaaa
121 gtacttctca tggataaaga gacgactggc atagtgagta tggtatacac acaatcggag
181 attctacaga aggaagtgta cctctttgaa cgcattgatt ctcaaaatcg agagatcatg
241 aaacacctga aggcaatttg ttttcttcga cctacaaagg agaatgtgga ttatattatt
301 caggagctcc gaagacccaa atacactata tatttcattt atttcagtaa tgtgatcagc
361 aagagtgacg tgaagtcatt ggctgaagct gatgaacagg aagttgtggc tgaggttcag
421 gaattttatg gtgattacat tgctgtgaac ccacatttgt tttccctcaa tattttgggt
481 tgctgccagg gtcgaaattg ggatccagcc cagctatcta gaacaactca agggcttaca
541 gctctccttt tatctctgaa gaagtgtccc atgattcgtt atcagctctc atcagaggca
601 gcaaagagac ttgcagagtg cgttaagcaa gtgataacta aagaatatga actgtttgaa
661 ttccgtcgga cagaggttcc tccattgctc cttattttag atcgctgtga tgatgccatc
721 accccattgc taaaccagtg gacatatcag gccatggtcc acgaactact aggcataaac
781 aacaatcgga ttgatctttc cagagtgccg ggaatcagta aagacttaag agaagtggtc
841 ctatctgctg aaaatgatga attctatgct aataatatgt acctgaactt tgctgagatt
901 ggtagcaata taaagaatct catggaagat tttcagaaga agaaaccaaa agaacagcaa
961 aaactagaat caatagcaga catgaaggcg tttgttgaga attatccaca gttcaagaaa
1021 atgtctggga ctgtttcaaa gcatgtgaca gtggttggag aactgtctcg attggtcagt
1081 gaacggaatc tgctggaggt ttcagaggtt gagcaagaac tggcctgtca aaatgaccat
1141 tctagtgctc tccagaatat aaaaaggctt ctgcagaacc ccaaagtgac agagtttgat
1201 gctgcccgcc tggtgatgct ttatgcttta cattatgagc gacacagcag caatagcctg
1261 ccaggactaa tgatggacct caggaataaa ggtgtttctg agaagtatcg aaagctcgtg
1321 tctgcagttg ttgaatatgg tggtaaacga gtcagaggaa gtgacctctt cagccccaaa
1381 gatgctgtgg ctatcaccaa acaattcctc aaaggactga agggagtaga aaatgtatat
1441 acacagcatc aacctttcct acatgaaacc ctggatcatc tcatcaaagg aaggcttaag
1501 gaaaacctat atccttattt aggccccagc acactcagag acagacctca ggatatcatt
1561 gtgtttgtaa ttggaggagc cacctatgaa gaggctctaa cagtttataa cctgaaccgc
1621 accactcctg gagtgaggat tgtcctggga ggcaccacag tgcacaacac gaaaagtttc
1681 ctagaggaag ttctggcttc tggactgcac agccgaagca aggagagctc tcaagtcaca
1741 tcaaggtcag cgagcagaag atgaaacggt ggttggggga agggcacagc ttcctctctt
1801 gtccccacta caggttttcc ctactaaaca aaggtgttgg agagcagctt tgggttctgt
1861 gctggttgtt agaactcatc tccaggtagc ccacggatac gtggttggca cagacacaag
1921 actcccagag ttgtcctaac aataagtctg agcccatctc aacccacttt tctccggtag
1981 tctttatgta tctgttagca caatcacttc agttactgat gaattttgtt gggatctgac
2041 ttggggaaag ggttatcaga gcctagaggg gcttaaaaag taatcgtttg atgtacatac
2101 ctacctcctt ggcttccttt ctcttccctt aaccctttct gcttttcatt aaccacattc
2161 ctgcacaact catttctgaa aacctaccat gtttctttac agagccatcc aaaaattttt
2221 tgtccctaca tagcaatttt ctgtggcact gagaaaccat gtatgaccac aataaaaatc
2281 cattttgtga aaggaaaaaa aaaaaaaaaa
//