LOCUS BC012884 1273 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:9240
IMAGE:3857911), complete cds.
ACCESSION BC012884
VERSION BC012884.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1273)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1273)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: c Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68223312.
FEATURES Location/Qualifiers
source 1..1273
/db_xref="H-InvDB:HIT000036012"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9240 IMAGE:3857911"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1273
/gene="CD47"
/gene_synonym="IAP"
/gene_synonym="OA3"
/db_xref="GeneID:961"
/db_xref="HGNC:HGNC:1682"
/db_xref="MIM:601028"
CDS 104..1021
/gene="CD47"
/gene_synonym="IAP"
/gene_synonym="OA3"
/codon_start=1
/product="CD47 molecule"
/protein_id="AAH12884.1"
/db_xref="GeneID:961"
/db_xref="HGNC:HGNC:1682"
/db_xref="MIM:601028"
/translation="MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVT
NMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDK
SDAVSHTGNYTCEVTELTREGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQF
GIKTLKYRSGGMDEKTIALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTG
ILILLHYYVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLS
ILALAQLLGLVYMKFVASNQKTIQPPRNN"
BASE COUNT 369 a 237 c 286 g 381 t
ORIGIN
1 tgcctgtgac gcgcggcggc ggtcggtcct gcctgtaacg gcggcggcgg ctgctgctcc
61 agacacctgc ggcggcggcg gcgaccccgc ggcgggcgcg gagatgtggc ccctggtagc
121 ggcgctgttg ctgggctcgg cgtgctgcgg atcagctcag ctactattta ataaaacaaa
181 atctgtagaa ttcacgtttt gtaatgacac tgtcgtcatt ccatgctttg ttactaatat
241 ggaggcacaa aacactactg aagtatacgt aaagtggaaa tttaaaggaa gagatattta
301 cacctttgat ggagctctaa acaagtccac tgtccccact gactttagta gtgcaaaaat
361 tgaagtctca caattactaa aaggagatgc ctctttgaag atggataaga gtgatgctgt
421 ctcacacaca ggaaactaca cttgtgaagt aacagaatta accagagaag gtgaaacgat
481 catcgagcta aaatatcgtg ttgtttcatg gttttctcca aatgaaaata ttcttattgt
541 tattttccca atttttgcta tactcctgtt ctggggacag tttggtatta aaacacttaa
601 atatagatcc ggtggtatgg atgagaaaac aattgcttta cttgttgctg gactagtgat
661 cactgtcatt gtcattgttg gagccattct tttcgtccca ggtgaatatt cattaaagaa
721 tgctactggc cttggtttaa ttgtgacttc tacagggata ttaatattac ttcactacta
781 tgtgtttagt acagcgattg gattaacctc cttcgtcatt gccatattgg ttattcaggt
841 gatagcctat atcctcgctg tggttggact gagtctctgt attgcggcgt gtataccaat
901 gcatggccct cttctgattt caggtttgag tatcttagct ctagcacaat tacttggact
961 agtttatatg aaatttgtgg cttccaatca gaagactata caacctccta ggaataactg
1021 aagtgaagtg atggactccg atttggagag tagtaagacg tgaaaggaat acacttgtgt
1081 ttaagcacca tggccttgat gattcactgt tggggagaag aaacaagaaa agtaactggt
1141 tgtcacctat gagaccctta cgtgattgtt agttaagttt ttattcaaag cagctgtaat
1201 ttagttaata aaataattat gatctatgtt gtttgcccaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aaa
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