LOCUS BC012532 1527 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C-X-C motif) ligand 11, mRNA (cDNA clone
MGC:13317 IMAGE:4096572), complete cds.
ACCESSION BC012532
VERSION BC012532.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1527)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1527)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: e Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14790145.
FEATURES Location/Qualifiers
source 1..1527
/db_xref="H-InvDB:HIT000035855"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13317 IMAGE:4096572"
/tissue_type="Bone marrow, chronic myelogenous leukemia"
/clone_lib="NIH_MGC_54"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1527
/gene="CXCL11"
/gene_synonym="b-R1"
/gene_synonym="H174"
/gene_synonym="I-TAC"
/gene_synonym="IP-9"
/gene_synonym="IP9"
/db_xref="GeneID:6373"
/db_xref="HGNC:HGNC:10638"
/db_xref="MIM:604852"
CDS 215..499
/gene="CXCL11"
/gene_synonym="b-R1"
/gene_synonym="H174"
/gene_synonym="I-TAC"
/gene_synonym="IP-9"
/gene_synonym="IP9"
/codon_start=1
/product="chemokine (C-X-C motif) ligand 11"
/protein_id="AAH12532.1"
/db_xref="GeneID:6373"
/db_xref="HGNC:HGNC:10638"
/db_xref="MIM:604852"
/translation="MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVAD
IEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF"
BASE COUNT 548 a 256 c 275 g 448 t
ORIGIN
1 ggggagagaa caaaacagaa actcttggaa gcaggaaagg tgcatgactc aaagagggaa
61 attcctgtgc cataaaagga ttgctggtgt ataaaatgct ctatatatgc caattaccaa
121 tttcctttca tgttcagcat ttctactcct tccaagaaga gcagcaaagc tgaagtagca
181 gcaacagcac cagcagcaac agcaaaaaac aaacatgagt gtgaagggca tggctatagc
241 cttggctgtg atattgtgtg ctacagttgt tcaaggcttc cccatgttca aaagaggacg
301 ctgtctttgc ataggccctg gggtaaaagc agtgaaagtg gcagatattg agaaagcctc
361 cataatgtac ccaagtaaca actgtgacaa aatagaagtg attattaccc tgaaagaaaa
421 taaaggacaa cgatgcctaa accccaaatc gaagcaagca aggcttataa tcaaaaaagt
481 tgaaagaaag aatttttaaa aatatcaaaa catatgaagt cctggaaaag ggcatctgaa
541 aaacctagaa caagtttaac tgtgactact gaaatgacaa gaattctaca gtaggaaact
601 gagacttttc tatggttttg tgactttcaa cttttgtaca gttatgtgaa ggatgaaagg
661 tgggtgaaag gaccaaaaac agaaatacag tcttcctgaa tgaatgacaa tcagaattcc
721 actgcccaaa ggagtccaac aattaaatgg atttctagga aaagctacct taagaaaggc
781 tggttaccat cggagtttac aaagtgcttt cacgttctta cttgttgtat tatacattca
841 tgcatttcta ggctagagaa ccttctagat ttgatgctta caactattct gttgtgacta
901 tgagaacatt tctgtctcta gaagttatct gtctgtattg atctttatgc tatattacta
961 tctgtggtta cagtggagac attgacatta ttactggagt caagccctta taagtcaaaa
1021 gcatctatgt gtcgtaaagc attcctcaaa cattttttca tgcaaataca cacttctttc
1081 cccaaatatc atgtagcaca tcaatatgta gggaaacatt cttatgcatc atttggtttg
1141 ttttataacc aattcattaa atgtaattca taaaatgcac tatgaaaaaa attatatgct
1201 atgggatact ggcaacagtg cacatatttc ataaccaaat tagcagcacc ggtcttaatt
1261 tgatgttttt caacttttat tcattgagat gttttgaagc aattaggata tgtgtgttta
1321 ctgtactttt tgttttgatc cgtttgtata aatgatagca atatcttgga cacatttgaa
1381 atacaaaatg tttttgtcta ccaaagaaaa atgttgaaaa ataagcaaat gtatacctag
1441 caatcacttt tactttttgt aattctgtct cttagaaaaa tacataatct aatcaacaaa
1501 aaaaaaaaaa aaaaaaaaaa aaaaaaa
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