LOCUS BC012419 1157 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens CD40 molecule, TNF receptor superfamily member 5, mRNA
(cDNA clone MGC:9013 IMAGE:3856903), complete cds.
ACCESSION BC012419
VERSION BC012419.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1157)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1157)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: a Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23312369.
FEATURES Location/Qualifiers
source 1..1157
/db_xref="H-InvDB:HIT000035807"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9013 IMAGE:3856903"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1157
/gene="CD40"
/gene_synonym="Bp50"
/gene_synonym="CDW40"
/gene_synonym="MGC9013"
/gene_synonym="p50"
/db_xref="GeneID:958"
/db_xref="HGNC:HGNC:11919"
/db_xref="MIM:109535"
CDS 58..891
/gene="CD40"
/gene_synonym="Bp50"
/gene_synonym="CDW40"
/gene_synonym="MGC9013"
/gene_synonym="p50"
/codon_start=1
/product="CD40 molecule, TNF receptor superfamily member
5"
/protein_id="AAH12419.1"
/db_xref="GeneID:958"
/db_xref="HGNC:HGNC:11919"
/db_xref="MIM:109535"
/translation="MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPG
QKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTI
CTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEK
CHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKV
AKKPTNKAPHPKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQER
Q"
BASE COUNT 278 a 335 c 310 g 234 t
ORIGIN
1 gtcagcagag gcctcgctcg ggcgcccagt ggtcctgccg cctggtctca cctcgctatg
61 gttcgtctgc ctctgcagtg cgtcctctgg ggctgcttgc tgaccgctgt ccatccagaa
121 ccacccactg catgcagaga aaaacagtac ctaataaaca gtcagtgctg ttctttgtgc
181 cagccaggac agaaactggt gagtgactgc acagagttca ctgaaacgga atgccttcct
241 tgcggtgaaa gcgaattcct agacacctgg aacagagaga cacactgcca ccagcacaaa
301 tactgcgacc ccaacctagg gcttcgggtc cagcagaagg gcacctcaga aacagacacc
361 atctgcacct gtgaagaagg ctggcactgt acgagtgagg cctgtgagag ctgtgtcctg
421 caccgctcat gctcgcccgg ctttggggtc aagcagattg ctacaggggt ttctgatacc
481 atctgcgagc cctgcccagt cggcttcttc tccaatgtgt catctgcttt cgaaaaatgt
541 cacccttgga caagctgtga gaccaaagac ctggttgtgc aacaggcagg cacaaacaag
601 actgatgttg tctgtggtcc ccaggatcgg ctgagagccc tggtggtgat ccccatcatc
661 ttcgggatcc tgtttgccat cctcttggtg ctggtcttta tcaaaaaggt ggccaagaag
721 ccaaccaata aggcccccca ccccaagcag gaaccccagg agatcaattt tcccgacgat
781 cttcctggct ccaacactgc tgctccagtg caggagactt tacatggatg ccaaccggtc
841 acccaggagg atggcaaaga gagtcgcatc tcagtgcagg agagacagtg aggctgcacc
901 cacccaggag tgtggccacg tgggcaaaca ggcagttggc cagagagcct ggtgctgctg
961 ctgctgtggc gtgagggtga ggggctggca ctgactgggc atagctcccc gcttctgcct
1021 gcacccctgc agtttgagac aggagacctg gcactggatg cagaaacagt tcaccttgaa
1081 gaacctctca cttcaccctg gagcccatcc agtctcccaa cttgtattaa agacagaggc
1141 agaaaaaaaa aaaaaaa
//