LOCUS BC012333 2228 bp mRNA linear HUM 25-JAN-2007
DEFINITION Homo sapiens sterol-C5-desaturase (ERG3 delta-5-desaturase homolog,
S. cerevisiae)-like, mRNA (cDNA clone MGC:2084 IMAGE:3537285),
complete cds.
ACCESSION BC012333
VERSION BC012333.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2228)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2228)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: p Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68160944.
FEATURES Location/Qualifiers
source 1..2228
/db_xref="H-InvDB:HIT000035762"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2084 IMAGE:3537285"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2228
/gene="SC5DL"
/gene_synonym="ERG3"
/gene_synonym="S5DES"
/gene_synonym="SC5D"
/db_xref="GeneID:6309"
/db_xref="HGNC:HGNC:10547"
/db_xref="MIM:602286"
CDS 190..1089
/gene="SC5DL"
/gene_synonym="ERG3"
/gene_synonym="S5DES"
/gene_synonym="SC5D"
/codon_start=1
/product="sterol-C5-desaturase (ERG3 delta-5-desaturase
homolog, S. cerevisiae)-like"
/protein_id="AAH12333.1"
/db_xref="GeneID:6309"
/db_xref="HGNC:HGNC:10547"
/db_xref="MIM:602286"
/translation="MDLVLRVADYYFFTPYVYPATWPEDDIFRQAISLLIVTNVGAYI
LYFFCATLSYYFVFDHALMKHPQFLKNQVRREIKFTVQALPWISILTVALFLLEIRGY
SKLHDDLGEFPYGLFELVVSIISFLFFTDMFIYWIHRGLHHRLVYKRLHKPHHIWKIP
TPFASHAFHPIDGFLQSLPYHIYPFIFPLHKVVYLSLYILVNIWTISIHDGDFRVPQI
LQPFINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGK
RSSHSGNGCKNEKLFNGEFTKTE"
BASE COUNT 694 a 397 c 425 g 712 t
ORIGIN
1 agagacttca gcgcctggga ctcgggtggg cgaggcggaa ggtgtcctcg cagcacggct
61 tttctccgcg ccgcggttgg ttagcgagtg ccctctgggt gctaggcgtt gggcggatgg
121 taggatcgcg gtagcatacg gatccgagtc ctgcgccgag tgagaggaga ggctggcagg
181 ggctaagtga tggatcttgt actccgtgtt gcagattact atttttttac accatacgtg
241 tatccagcca catggccaga agatgacatc ttccgacaag ctattagtct tctgattgta
301 acaaatgttg gtgcttacat cctttatttc ttctgtgcaa cactgagcta ttattttgtc
361 ttcgatcatg cattaatgaa acatccacaa tttttaaaga atcaagtccg tcgagagatt
421 aagtttactg tccaggcatt gccatggata agtattctta ctgttgcact gttcttgctg
481 gagataagag gttacagcaa attacatgat gacctaggag agtttccata tggattgttt
541 gaacttgtcg ttagtataat atctttcctc tttttcactg acatgttcat ctactggatt
601 cacagaggcc ttcatcatag actggtatat aagcgcctac ataaacctca ccatatttgg
661 aagattccta ctccatttgc aagtcatgct tttcacccta ttgatggctt tcttcagagt
721 ctaccttacc atatataccc ttttatcttt ccattacaca aggtggttta tttaagtctg
781 tacatcttgg ttaatatctg gacaatttcc attcatgacg gtgattttcg tgtcccccaa
841 atcttacagc catttattaa tggctcagct catcatacag accaccatat gttctttgac
901 tataattatg gacaatattt cactttgtgg gataggattg gcggctcatt caaaaatcct
961 tcatcctttg aggggaaggg accgctcagt tatgtgaagg agatgacaga gggaaagcgc
1021 agcagccatt caggaaatgg ctgtaagaat gaaaaattat tcaatggaga gtttacaaag
1081 actgaataga ttattgccca gttattctta agtaaggaca aagaaggaaa tatcatcgta
1141 tttctttttt ttaataagga aaaaataata tccatacagt caagatacat agtaaatggt
1201 atcatttgga aatcagcatc gtgggcactg ctgaggaatg atcctagtgg taggtcagaa
1261 gaagatgctg tgaacaccag gactttaatc ttatgcttaa aatgccagat gttgttcggg
1321 ggacaacttg tatctttcta gcagcagatc tgtagtttgt atagcctcaa caacaatttt
1381 aaataagatg gagaataaat tattgagggg actaggctat atgcatttgc cttcatccac
1441 ccatgtttat taagaatcat tgtgcttaat aataccaaga ctaagcacca taaccaagaa
1501 atactaatgt aaagattgtt tcttgtttca ggaatggtta attcttcaac gttggtatga
1561 taatgataac ttgttttgac ttgaataaag tactacatca gtgtggaaaa aaattctgat
1621 acattagcag ctatgtaaat gacctaattg atagcaggtg taataagact atcgtcttcc
1681 tacacatagg aggctcattc tctggacaca ctatcaccta ttacatttta ctgattaaca
1741 aataaattgg aatttaaaaa tatcgatatc accatgattt aatccagatc tgggattatg
1801 tagctaaaca ttgtgatgat tattatttaa aaccattatt taataagagt aaaaatatgt
1861 gaatctggat atatttaaaa aaagaaattt gatgcccaga taatatatta ggcactactg
1921 attttttagt taaattgatg cactacactt ttgatgtttg aagttacaaa cctgtaattt
1981 ttttgtaaag gaaataattg ccaaatacct aggcccattg ctgacgatta gttctaaaat
2041 cttattcctc ctcttctccc ctcacttttc cctacttcct ctgcaaaaag atttaacaaa
2101 tacattcata aggaaatgtg tgttgtaaca aatatattgc aaaaacatag tttgtaaagg
2161 cattctataa gctatttatg taaaatcaat aaaagttgat cataattaaa aaaaaaaaaa
2221 aaaaaaaa
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