LOCUS BC012142 3033 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit
C2, mRNA (cDNA clone MGC:20253 IMAGE:4647654), complete cds.
ACCESSION BC012142
VERSION BC012142.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3033)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3033)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: n Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47717097.
FEATURES Location/Qualifiers
source 1..3033
/db_xref="H-InvDB:HIT000035690"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20253 IMAGE:4647654"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3033
/gene="ATP6V1C2"
/gene_synonym="ATP6C2"
/gene_synonym="VMA5"
/db_xref="GeneID:245973"
/db_xref="HGNC:HGNC:18264"
CDS 21..1166
/gene="ATP6V1C2"
/gene_synonym="ATP6C2"
/gene_synonym="VMA5"
/codon_start=1
/product="ATPase, H+ transporting, lysosomal 42kDa, V1
subunit C2"
/protein_id="AAH12142.1"
/db_xref="GeneID:245973"
/db_xref="HGNC:HGNC:18264"
/translation="MSEFWLISAPGDKENLQALERMNTVTSKSNLSYNTKFAIPDFKV
GTLDSLVGLSDELGKLDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLANGVDLTSFVT
HFEWDMAKYPVKQPLVSVVDTIAKQLAQIEMDLKSRTAAYDTLKTNLENLEKKSMGNL
FTRTLSDIVSKEDFVLDSEYLVTLLVIVPKPNYSQWQKTYESLSDMVVPRSTKLITED
KEGGLFTVTLFRKVIEDFKTKAKENKFTVREFYYDEKEIEREREEMARLLSDKKQQYG
PLLRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAVLLQPHKKSSTKRLREV
LNSVFRHLDEVAATSILDASVEIPGLQLNNQDYFPYVYFHIDLSLLD"
BASE COUNT 932 a 674 c 648 g 779 t
ORIGIN
1 ggtaagagaa gactggaagc atgtcggagt tttggttaat ttctgcccct ggcgataagg
61 aaaatttgca agctctggag aggatgaata ctgtaacctc caagtccaac ctgtcttata
121 ataccaaatt cgctattcct gacttcaagg tggggacctt ggattccctg gttggcctct
181 ctgatgagtt ggggaaactc gacacctttg ctgaaagcct cataaggaga atggctcaga
241 gcgtggtgga agtcatggag gactcaaagg ggaaggtcca ggagcacctc ctggcaaacg
301 gagttgactt aacatccttt gtgacccact ttgaatggga catggccaaa tatcctgtca
361 agcagccgct cgtgagtgtg gtggacacaa tagccaagca actggcgcag atcgagatgg
421 acctgaagtc ccgaacggcc gcctacgaca ctctgaagac aaacctggag aacctggaaa
481 agaaatccat ggggaacctc ttcacccgga cactgagtga tattgtgagc aaagaggact
541 tcgtgctgga ttctgaatat ctcgtcacac ttctggtcat cgtccccaaa ccaaactact
601 cacaatggca aaaaacctac gaatctctct cagacatggt ggtccctcga tcaaccaaac
661 tcattactga ggacaaggaa gggggccttt tcactgtgac tctgtttcga aaagtgattg
721 aagatttcaa aaccaaggcc aaagaaaaca agttcactgt tcgtgaattt tactatgatg
781 agaaggaaat tgaaagggaa agggaggaga tggccagatt gctgtctgat aagaagcaac
841 agtatggccc cctgctgcgc tggctcaagg tgaacttcag tgaagccttc attgcctgga
901 tccacatcaa ggccctgaga gtgtttgtgg agtccgtgct caggtatgga ctaccagtga
961 acttccaggc agtgctcctg cagccgcata agaagtcatc caccaagcgt ttaagagagg
1021 ttctaaactc tgtcttccga catctggatg aagtagccgc tacaagtata ctggatgcat
1081 ctgtggagat cccgggactg caactcaata accaagacta ttttccttat gtctacttcc
1141 atattgacct tagtcttctt gactagaaag gccagctggc acctctgtct catgttcgtg
1201 cagattatta cagacacctc tttcctttag ccagagaatg gttcaaatgt cttacagaac
1261 taagatcttt ttcagagaaa ttgctcacaa aagttagtga cagttgtatt tattttttta
1321 agttacaata aaatgctctc aagtcctttg aatgttccaa caaattcaaa acttcatttt
1381 ctgaatgttt tacataaatg cgaactacct gttcgcattg gtaacctgct gctgtatttc
1441 atgtcttaac ggctattttg aggttcatta acaacataga aagccttgaa ctgtataacc
1501 agctagattc cttaataatt agtcactaga gacagcccaa agacaaatat tgggcaggaa
1561 atcagttctc actgagcccg gtttccatgt aaaatctctg ttgtggtggg cataggtggc
1621 accatctaaa gaaaagaggt cttgtttttt gtttaaaaaa gtttgtgggg aggaaagaca
1681 tctgtgtatc acttcaaaat attgatttac tgctaaacat cactctgaat ttatgatgtg
1741 gatactaact tcatacattt atcggcattg tccaaaatat tttattcttt aatggaaaaa
1801 gccattaata ttcaaatgaa gggatcacat taaaaaaaac ccatacataa gaaacagcct
1861 ccaagaacat tcaagcagca gtcagagaga aaaatgtttc gacagccaag ttttcttcaa
1921 aatattatgt gacagaatac gactcaattc accggctaca acaattcata gaatttttca
1981 atgttttctt gagatgcaaa agttcactgt tgcagtgttt tcaaatgacc aatcaagtac
2041 tacttcttgg ttaaaaggcc actggtagag tcatctgagt gtagagaatg tcccttcact
2101 gctggaaaaa tccactggct cccaagaaaa gaaaatggtc tgaagcctct gttgtggctc
2161 tcacaactca tctttcccta agtcatcaag ctccacatca ctgaggtcaa tgtcatcctc
2221 cacgggaagc tgggagacga cagaaagcca ctgttagatc tgcagaaggg gacaccctgg
2281 aaggtcaaca tctcatttta tggaagagcg actctctgga gctactcctg ctacaatcca
2341 ggttctcctc agtctgactc ctaccctgac cttcgtacct atgattatac ggatggaaaa
2401 gctcagaact caggtgaaac atttcaacat cacatcactc accattttaa cactggaagc
2461 cacttgaacg tgtccttttg aggagggtgg gacacaacag tacagaaata agtgctaatt
2521 tcaaagctat cattttctat ttttctaaga taaagtaaat gaattccagg ttaaatgttc
2581 actttaaggt aataatcagg aaagcaacct tactactgaa atgtatcttg gctgtcaaga
2641 gtatcaaatg ccatgcagca cttaaacttg tgataaggaa gatgaagggt cttcagagaa
2701 gaacctctta aaaggcccac gggtgcacca gggctgaggt ctgatgggaa ggacttgact
2761 ccaggtgcag agatgcacag gctcaagaga gtaaaccagg actgctgccc gcacagcttc
2821 cctcccgggc actcacctcg ccatccctgc cgtcccaagg ctctctctca acgatggtag
2881 ggaaagcccc gcctcctaca ggtgccgtgg agccacgccc aaaagagagc tcccttaggg
2941 aaaaatgacc aaaacacaca cacacattta caatggactg ctggtgcaga agaataaaca
3001 actttaaaaa taaaaaaaaa aaaaaaaaaa aaa
//