LOCUS BC012115 2289 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 5, mRNA
(cDNA clone MGC:20128 IMAGE:4684829), complete cds.
ACCESSION BC012115
VERSION BC012115.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2289)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2289)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: p Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361412.
FEATURES Location/Qualifiers
source 1..2289
/db_xref="H-InvDB:HIT000035670"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20128 IMAGE:4684829"
/tissue_type="Skin, melanoma, amelanotic"
/clone_lib="NIH_MGC_41"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2289
/gene="DNAJB5"
/gene_synonym="Hsc40"
/db_xref="GeneID:25822"
CDS 105..1265
/gene="DNAJB5"
/gene_synonym="Hsc40"
/codon_start=1
/product="DNAJB5 protein"
/protein_id="AAH12115.1"
/db_xref="GeneID:25822"
/translation="MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEK
FKEIAEAYDVLSDPKKRGLYDQYGEEGLKTGGGTSGGSSGSFHYTFHGDPHATFASFF
GGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPL
YPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRG
WKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGC
TVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLT
PQTRQILKQQYPQHSLHSMCTQLDVHWTLATFSKMQKKATGFQENVPVPDPF"
misc_feature 105..695
/gene="DNAJB5"
/gene_synonym="Hsc40"
/note="DnaJ; Region: DnaJ-class molecular chaperone with
C-terminal Zn finger domain [Posttranslational
modification, protein turnover, chaperones]"
/db_xref="CDD:COG0484"
BASE COUNT 567 a 614 c 605 g 503 t
ORIGIN
1 cggagccgga gccgggggag ggggcagcgg ctgtctcacg gaccacggcg gcgcccgcag
61 ctcctcaccg aaacaaggag accagtgctg gtccagtggc tgtgatggga aaagattatt
121 acaagattct tgggatccca tcgggggcca acgaggatga gatcaagaaa gcctaccgga
181 agatggcctt gaagtaccac ccagacaaga ataaagaacc caacgctgag gagaagttta
241 aggagattgc agaggcctat gatgtgctaa gtgaccccaa gaaacggggc ctgtatgacc
301 agtatgggga ggaaggcctg aagaccggcg gtggcacatc aggtggctcc agtggctcct
361 ttcactacac ctttcatggg gacccccatg ccacctttgc ctccttcttt ggtggctcca
421 accccttcga tatcttcttt gccagcagcc gctccactcg gcccttcagt ggctttgacc
481 cagatgacat ggatgtggat gaagatgagg acccatttgg cgctttcggc cgttttggct
541 tcaatgggct gagtaggggt ccaaggcgag ccccagaacc actgtaccct cggcgcaagg
601 tgcaggaccc cccagtggtg cacgagctgc gggtgtccct ggaggagatc taccatggct
661 ccaccaagcg catgaagatc acaaggcgtc gcctcaaccc tgatgggcga actgtgcgca
721 ccgaggacaa gatcctgcac atagtcatca agcgtggctg gaaggaaggc accaagatca
781 ccttccccaa agaaggcgac gccacacctg acaacatccc tgctgacatc gtctttgtgc
841 tcaaagacaa gccccatgca cacttccgcc gagatggcac caacgtgctc tacagtgccc
901 tgatcagcct caaggaggcg ctgtgtggct gcactgtgaa cattcccact atcgacggcc
961 gagtgatccc tttgccctgc aatgatgtca tcaagccagg caccgtgaag agactccgtg
1021 gggagggcct tcccttcccc aaagtgccaa ctcagcgagg agacctcatt gttgagttca
1081 aagttcgctt cccagacaga ttaacaccac agacaagaca gatccttaag cagcaatacc
1141 cccaacactc actccactca atgtgcaccc agcttgatgt ccactggaca ctggcaactt
1201 tttctaaaat gcaaaaaaaa gccactggtt ttcaggaaaa tgttcctgtc cctgacccct
1261 tttagagctg ggctgcctgg ggggagtggg agggaggtgg ggagagctag cccaggccag
1321 gggtcaatgt tcatgtcact agctttcaat ccagtttcca ctgcagtggc tggagagtga
1381 cctgagtgct acttgaagat atgtagagat tcgttatcca tgcctgtaca tagcatgtcc
1441 tcctcccctc agctttgcta ataccagtcc cctcccttcc ctttggcttc ctgctgttgg
1501 gggtggaaaa gactagaaag gacattgctt tctcagcccc acccccaggt ccacagtgtc
1561 caaggtaatg gcacacatat tcatgcacaa gaagcactca cctagagctg tctgtgcctc
1621 tctgggagaa aggagagagg ataagaaggg aaagttcaca acctgtgaac agggacttga
1681 gcacgagaca cttttcatct ggagcagggg ggtgagctcc tcagcagcct ccgtaacagc
1741 tgccctgcct acacctgcag agctggaggt tctgtcctcc ctgctgctct caggagtgtt
1801 caagggtgga gggcagggaa tggggcctga ggtattaagg ctaagaggtg ggggacaggg
1861 cccatctacc agccttcatc aggaagggaa agggctttgg ggtcaggtgg cagctattcc
1921 ccaccaagag attcagggtc acaggttttt ccccacacct ctgaactcag ggcctagcca
1981 cccccaaact tccaaatccc acttttgtga tatgtgaagc tactcatttc ttacccttgg
2041 aggctgtgtg gggaatttcc agccctttta tgcctgtgtg atcccacccc acccccatag
2101 ttgtataaag gtcatagtga agaagctggg ggaagactgc ttcagccaga tcctggggtg
2161 gggtctttag gttttctcac tttgacaacc cccgaatgtt tttatagtag tttttttgta
2221 tttttttgta atgacagtat tatgtaaaaa ataaagtatt ttaaaaataa aaaaaaaaaa
2281 aaaaaaaaa
//