LOCUS BC012109 1972 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homer homolog 2 (Drosophila), mRNA (cDNA clone
MGC:20110 IMAGE:4636423), complete cds.
ACCESSION BC012109
VERSION BC012109.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1972)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1972)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: j Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46249348.
FEATURES Location/Qualifiers
source 1..1972
/db_xref="H-InvDB:HIT000035666"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20110 IMAGE:4636423"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1972
/gene="HOMER2"
/gene_synonym="ACPD"
/gene_synonym="CPD"
/gene_synonym="HOMER-2"
/gene_synonym="HOMER2A"
/gene_synonym="HOMER2B"
/gene_synonym="Vesl-2"
/db_xref="GeneID:9455"
/db_xref="HGNC:HGNC:17513"
/db_xref="MIM:604799"
CDS 187..1218
/gene="HOMER2"
/gene_synonym="ACPD"
/gene_synonym="CPD"
/gene_synonym="HOMER-2"
/gene_synonym="HOMER2A"
/gene_synonym="HOMER2B"
/gene_synonym="Vesl-2"
/codon_start=1
/product="homer homolog 2 (Drosophila)"
/protein_id="AAH12109.1"
/db_xref="GeneID:9455"
/db_xref="HGNC:HGNC:17513"
/db_xref="MIM:604799"
/translation="MGEQPIFTTRAHVFQIDPNTKKNWMPASKQAVTVSYFYDVTRNS
YRIISVDGAKVIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEK
FQEVKEAAKIAKDKTQEKIETSSNHSQASSVNGTDDEKASHAGPANTHLKSENDKLKI
ALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLRNKI
DELEEQCSEINREKEKNTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYV
SEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKVELKSFLEVLDGKIDDLHDFRR
GLSKLGTDN"
BASE COUNT 550 a 488 c 553 g 381 t
ORIGIN
1 cgcgcctggc ggcggtggcg gcagtggcag cagtggcagc cgcgcagccc cgcggaatgg
61 agcggcgccg gggctgagcc gggcgcgcac gggccgccgc atgtgccgcg cggggagcgg
121 ctgccgagcg ggcggagagc gagcgcgaga ggccccgtcg gagcggccgc cggagcagcg
181 ccggagatgg gagaacagcc catcttcacc acccgagcgc atgtcttcca gattgacccc
241 aacaccaaga agaactggat gcctgcgagc aagcaggcgg tcaccgtttc ctacttctat
301 gatgtcacaa ggaacagcta tcggatcatc agtgtggacg gagccaaggt gatcataaac
361 agcacaatca caccgaatat gaccttcacc aaaacgtcac agaagtttgg gcagtgggcc
421 gacagcagag ccaacacagt gtttggtttg gggttttcct ctgagcagca gctgacaaag
481 tttgcagaga aattccagga ggtgaaagaa gctgccaaga tagccaaaga caagacgcag
541 gagaaaatcg agacctcaag taatcattcc caagcatcca gtgtcaacgg gacggacgat
601 gaaaaggcct ctcacgccgg tccagccaac acacacctga agtctgagaa tgacaagctg
661 aagattgcct tgacgcagag cgcagccaac gtgaagaagt gggagatcga gctgcagacc
721 cttcgggaga gcaatgcacg gctgaccaca gcactgcagg agtcggcagc cagtgtggag
781 cagtggaaga ggcagttctc catctgccgt gatgagaatg accggctccg caacaagatt
841 gatgagctgg aagaacaatg cagtgagatc aacagagaga aggagaagaa cacgcagctg
901 aagaggagga tcgaggagct ggaggcagag ctccgagaaa aggagacaga gctgaaagat
961 ctccgaaaac aaagtgaaat catacctcag ctcatgtcag agtgcgaata tgtctctgag
1021 aagctagagg cggcagagag agacaatcaa aacctggaag acaaagtgcg ttccttaaag
1081 acagacattg aggagagcaa ataccgacag cgccacctga aggtggagtt gaagagcttc
1141 ctggaggtgc tggacgggaa gattgacgac ctgcatgact tccgccgagg gctctccaag
1201 ctgggcaccg ataactaggg ctggccgagg cccaggcccc gcccgtgagt cccaagcgtg
1261 tgtgcgagac cagatagctc taggacgttc ttctgtgtgc attgcttctg taaatgcagg
1321 cgcagtttgt cgtgtttcca aaccagttgt gccgtccact cactcctttt cagaatagaa
1381 atctcctctc gcttctctgg ccttgtgagg ttgtggacaa ctggaagatt ctgactcagg
1441 aatccagaac taggtctacc ttcaacattt atgcagtcag ggcagggatg tttatatctt
1501 tcataagggc tgttgcaacc atatgaactg aaaaaacacg cattttgtaa tccaaatatt
1561 gatattcttt acaccaagcc atcaggctcc ttttatcaaa tagcattcag agtatttgaa
1621 tgtccaccag acaccagccc cggggggcac agagagaaca acattcctct ctgtcaacat
1681 cgagaggctt taaaacaact gtttagtgga aactttctga gagatggaaa acaagcttct
1741 ggtgggtgca ttttctggcc cggagttgcc tgcatccacg ctactgcccc ctgccccccg
1801 cccccccagt ttgtacggtt gcaacagtgt tccttttctt ggttttaatt tctgagcaga
1861 tgattgtgct gtgggaacag cacacagtga gggtgcctag cacaatgtct ggcacaaagt
1921 aggtgcttaa taaatatttg ttcaattaaa aaaaaaaaaa aaaaaaaaaa aa
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