LOCUS BC011953 1631 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens paired box 6, mRNA (cDNA clone MGC:17209
IMAGE:3880468), complete cds.
ACCESSION BC011953
VERSION BC011953.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1631)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1631)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: m Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505614.
FEATURES Location/Qualifiers
source 1..1631
/db_xref="H-InvDB:HIT000035562"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17209 IMAGE:3880468"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1631
/gene="PAX6"
/gene_synonym="AN"
/gene_synonym="D11S812E"
/gene_synonym="MGDA"
/gene_synonym="WAGR"
/db_xref="GeneID:5080"
/db_xref="HGNC:HGNC:8620"
/db_xref="MIM:607108"
CDS 342..1610
/gene="PAX6"
/gene_synonym="AN"
/gene_synonym="D11S812E"
/gene_synonym="MGDA"
/gene_synonym="WAGR"
/codon_start=1
/product="paired box 6"
/protein_id="AAH11953.1"
/db_xref="GeneID:5080"
/db_xref="HGNC:HGNC:8620"
/db_xref="MIM:607108"
/translation="MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISR
ILQVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEI
RDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRP
GWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFT
QEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR
QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPS
FTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTT
STGLISPGVSVPVQVPGSEPDMSQYWPRLQ"
BASE COUNT 495 a 437 c 393 g 306 t
ORIGIN
1 gttttgctgg aggatgatga cagaggaatc tgagaattgc tctcacacac caacccagca
61 acatccgtgg agaaaactct caccagcaac tcctttaaaa caccgtcatt tcaaaccatt
121 gtggtcttca agcaacaaca gcagcacaaa aaaccccaac caaacaaaac tcttgacaga
181 agctgtgaca accagaaagg atgcctcata aagggggaag actttaacta ggggcgcgca
241 gatgtgtgag gccttttatt gtgagagtgg acagacatcc gagatttcag agccccatat
301 tcgagccccg tggaatcccg cggcccccag ccagagccag catgcagaac agtcacagcg
361 gagtgaatca gctcggtggt gtctttgtca acgggcggcc actgccggac tccacccggc
421 agaagattgt agagctagct cacagcgggg cccggccgtg cgacatttcc cgaattctgc
481 aggtgtccaa cggatgtgtg agtaaaattc tgggcaggta ttacgagact ggctccatca
541 gacccagggc aatcggtggt agtaaaccga gagtagcgac tccagaagtt gtaagcaaaa
601 tagcccagta taagcgggag tgcccgtcca tctttgcttg ggaaatccga gacagattac
661 tgtccgaggg ggtctgtacc aacgataaca taccaagcgt gtcatcaata aacagagttc
721 ttcgcaacct ggctagcgaa aagcaacaga tgggcgcaga cggcatgtat gataaactaa
781 ggatgttgaa cgggcagacc ggaagctggg gcacccgccc tggttggtat ccggggactt
841 cggtgccagg gcaacctacg caagatggct gccagcaaca ggaaggaggg ggagagaata
901 ccaactccat cagttccaac ggagaagatt cagatgaggc tcaaatgcga cttcagctga
961 agcggaagct gcaaagaaat agaacatcct ttacccaaga gcaaattgag gccctggaga
1021 aagagtttga gagaacccat tatccagatg tgtttgcccg agaaagacta gcagccaaaa
1081 tagatctacc tgaagcaaga atacaggtat ggttttctaa tcgaagggcc aaatggagaa
1141 gagaagaaaa actgaggaat cagagaagac aggccagcaa cacacctagt catattccta
1201 tcagcagtag tttcagcacc agtgtctacc aaccaattcc acaacccacc acaccggttt
1261 cctccttcac atctggctcc atgttgggcc gaacagacac agccctcaca aacacctaca
1321 gcgctctgcc gcctatgccc agcttcacca tggcaaataa cctgcctatg caacccccag
1381 tccccagcca gacctcctca tactcctgca tgctgcccac cagcccttcg gtgaatgggc
1441 ggagttatga tacctacacc cccccacata tgcagacaca catgaacagt cagccaatgg
1501 gcacctcggg caccacttca acaggactca tttcccctgg tgtgtcagtt ccagttcaag
1561 ttcccggaag tgaacctgat atgtctcaat actggccaag attacagtaa aaaaaaaaaa
1621 aaaaaaaaaa a
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