LOCUS BC011694 1589 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens H2A histone family, member X, mRNA (cDNA clone
MGC:19656 IMAGE:3139343), complete cds.
ACCESSION BC011694
VERSION BC011694.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1589)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1589)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011694.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: b Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1589
/db_xref="H-InvDB:HIT000035379"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19656 IMAGE:3139343"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1589
/gene="H2AFX"
/gene_synonym="H2A.X"
/gene_synonym="H2A/X"
/db_xref="GeneID:3014"
/db_xref="HGNC:HGNC:4739"
/db_xref="MIM:601772"
CDS 54..485
/gene="H2AFX"
/gene_synonym="H2A.X"
/gene_synonym="H2A/X"
/codon_start=1
/product="H2A histone family, member X"
/protein_id="AAH11694.1"
/db_xref="GeneID:3014"
/db_xref="HGNC:HGNC:4739"
/db_xref="MIM:601772"
/translation="MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERV
GAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVT
IAQGGVLPNIQAVLLPKKTSATVGPKAPSGGKKATQASQEY"
BASE COUNT 265 a 555 c 497 g 272 t
ORIGIN
1 ggcgtctgtt ctagtgtttg agccgtcgtg cttcaccggt ctacctcgct agcatgtcgg
61 gccgcggcaa gactggcggc aaggcccgcg ccaaggccaa gtcgcgctcg tcgcgcgccg
121 gcctccagtt cccagtgggc cgtgtacacc ggctgctgcg gaagggccac tacgccgagc
181 gcgttggcgc cggcgcgcca gtgtacctgg cggcagtgct ggagtacctc accgctgaga
241 tcctggagct ggcgggcaat gcggcccgcg acaacaagaa gacgcgaatc atcccccgcc
301 acctgcagct ggccatccgc aacgacgagg agctcaacaa gctgctgggc ggcgtgacga
361 tcgcccaggg aggcgtcctg cccaacatcc aggccgtgct gctgcccaag aagaccagcg
421 ccaccgtggg gccgaaggcg ccctcgggcg gcaagaaggc cacccaggcc tcccaggagt
481 actaagaggg cccgcgccgc ggccggccgc caggcctccc catgccacca caaaggccct
541 tttaagggcc accaccgccc tcatggaaag agctgagccg cttcagactg cggggcaagc
601 gggccgcggc tcccttcccc tcccctcccc tcgcccgcct tcgccgcccg gcctcgagtc
661 cccgcccgcc cccgctcccg tcccgcaccg cctgccgcgt cggcctcggg ccctgccctg
721 tccgccgtcc gccctccggt agggttcggg ccttccggat gcggcttggg cgctcttcgg
781 ggacctccgt ggcgcggaag acccgagcct gccgggggga ggccggcggc gccgcacctg
841 cccgcctcgg cgttcgtgac tcagccgccc catcccgagt cgctaagggg ctgcggggag
901 gccgcagcac cttctggaag acttggcctt ccgctctgac gcagggccga ggtgggcagt
961 ccaggccgag aggccggcgg ccctgaaggt gagtgaggcc ctcggcagct gcagccgggg
1021 tgtctggtac ccccccggcg tggtgcttag cccaggactt tcagacgcgg ccgctggccg
1081 gaaggctttg gtgggagaga cgcgatcgcc gatttcggtc tggcgcccct tctgcggccg
1141 ggacccaggc ctttcacatc agctctccct ccatcttcat tcataggtct gcgctggggc
1201 cgggacgaag cacttggtaa caggcacatc ttcctcccga gtgactgcct cctaggagga
1261 catttagggg agggcagagg cctgcagttt ggcttcacgg ctggctatgt ggacagcaag
1321 agtcgttttc gcggaagccg actggcagcc aggcctgtcg ggccccccga cgccgcccca
1381 tttcccttcc agcaaactca actcggcaat ccaagcacct agataccagc acaagtcggt
1441 taatccctgt ctggactgag cctccgttgg cttctgaact ggaattctgc agctaaccct
1501 tccacgacta gaaccttagg cattggggag ttttagatgg actaatttta ttaaaggatt
1561 gttttttttt taaaaaaaaa aaaaaaaaa
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