LOCUS BC011612 1716 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens methyl CpG binding protein 2 (Rett syndrome), mRNA
(cDNA clone MGC:10245 IMAGE:3956518), complete cds.
ACCESSION BC011612
VERSION BC011612.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1716)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1716)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: o Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7710148.
FEATURES Location/Qualifiers
source 1..1716
/db_xref="H-InvDB:HIT000035329"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10245 IMAGE:3956518"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1716
/gene="MECP2"
/gene_synonym="AUTSX3"
/gene_synonym="PPMX"
/gene_synonym="RTS"
/db_xref="GeneID:4204"
/db_xref="HGNC:HGNC:6990"
/db_xref="MIM:300005"
CDS 85..1545
/gene="MECP2"
/gene_synonym="AUTSX3"
/gene_synonym="PPMX"
/gene_synonym="RTS"
/codon_start=1
/product="methyl CpG binding protein 2 (Rett syndrome)"
/protein_id="AAH11612.1"
/db_xref="GeneID:4204"
/db_xref="HGNC:HGNC:6990"
/db_xref="MIM:300005"
/translation="MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHE
PVQPSAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPE
GWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVT
GRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPG
KLLVKMPFQTSPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVV
AAAAAEAKKKAVKESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGK
GLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLLPPLPPPPPE
PESSEDPTSPPEPQDLSSSVCKEEKMPRGGSLESDGCPKEPAKTQPAVATAATAAEKY
KHRGEGERKDIVSSSMPRPNREEPVDSRTPVTERVS"
BASE COUNT 495 a 490 c 477 g 254 t
ORIGIN
1 cagactcacc agttcctgct ttgatgtgac atgtgactcc ccagaataca ccttgcttct
61 gtagaccagc tccaacagga ttccatggta gctgggatgt tagggctcag ggaagaaaag
121 tcagaagacc aggacctcca gggcctcaag gacaaacccc tcaagtttaa aaaggtgaag
181 aaagataaga aagaagagaa agagggcaag catgagcccg tgcagccatc agcccaccac
241 tctgctgagc ccgcagaggc aggcaaagca gagacatcag aagggtcagg ctccgccccg
301 gctgtgccgg aagcttctgc ctcccccaaa cagcggcgct ccatcatccg tgaccgggga
361 cccatgtatg atgaccccac cctgcctgaa ggctggacac ggaagcttaa gcaaaggaaa
421 tctggccgct ctgctgggaa gtatgatgtg tatttgatca atccccaggg aaaagccttt
481 cgctctaaag tggagttgat tgcgtacttc gaaaaggtag gcgacacatc cctggaccct
541 aatgattttg acttcacggt aactgggaga gggagcccct cccggcgaga gcagaaacca
601 cctaagaagc ccaaatctcc caaagctcca ggaactggca gaggccgggg acgccccaaa
661 gggagcggca ccacgagacc caaggcggcc acgtcagagg gtgtgcaggt gaaaagggtc
721 ctggagaaaa gtcctgggaa gctccttgtc aagatgcctt ttcaaacttc gccagggggc
781 aaggctgagg ggggtggggc caccacatcc acccaggtca tggtgatcaa acgccccggc
841 aggaagcgaa aagctgaggc cgaccctcag gccattccca agaaacgggg ccgaaagccg
901 gggagtgtgg tggcagccgc tgccgccgag gccaaaaaga aagccgtgaa ggagtcttct
961 atccgatctg tgcaggagac cgtactcccc atcaagaagc gcaagacccg ggagacggtc
1021 agcatcgagg tcaaggaagt ggtgaagccc ctgctggtgt ccaccctcgg tgagaagagc
1081 gggaaaggac tgaagacctg taagagccct gggcggaaaa gcaaggagag cagccccaag
1141 gggcgcagca gcagcgcctc ctcacccccc aagaaggagc accaccacca tcaccaccac
1201 tcagagtccc caaaggcccc cgtgccactg ctcccacccc tgcccccacc tccacctgag
1261 cccgagagct ccgaggaccc caccagcccc cctgagcccc aggacttgag cagcagcgtc
1321 tgcaaagagg agaagatgcc cagaggaggc tcactggaga gcgacggctg ccccaaggag
1381 ccagctaaga ctcagcccgc ggttgccacc gccgccacgg ccgcagaaaa gtacaaacac
1441 cgaggggagg gagagcgcaa agacattgtt tcatcctcca tgccaaggcc aaacagagag
1501 gagcctgtgg acagccggac gcccgtgacc gagagagtta gctgacttta cacggagcgg
1561 attgcaaagc aaaccaacaa gaataaaggc agctgttgtc tcttctcctt atgggtaggg
1621 ctctgacaaa gcttcccgat taactgaaat aaaaaatatt tttttttctt tcagtaaaaa
1681 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//