LOCUS BC011460 1449 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chitinase 3-like 2, mRNA (cDNA clone MGC:17183
IMAGE:4214121), complete cds.
ACCESSION BC011460
VERSION BC011460.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1449)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1449)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: n Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68533254.
FEATURES Location/Qualifiers
source 1..1449
/db_xref="H-InvDB:HIT000035257"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17183 IMAGE:4214121"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1449
/gene="CHI3L2"
/gene_synonym="YKL-39"
/gene_synonym="YKL39"
/db_xref="GeneID:1117"
/db_xref="HGNC:HGNC:1933"
/db_xref="MIM:601526"
CDS 10..1182
/gene="CHI3L2"
/gene_synonym="YKL-39"
/gene_synonym="YKL39"
/codon_start=1
/product="chitinase 3-like 2"
/protein_id="AAH11460.1"
/db_xref="GeneID:1117"
/db_xref="HGNC:HGNC:1933"
/db_xref="MIM:601526"
/translation="MGATTMDQKSLWAGVVVLLLLQGGSAYKLVCYFTNWSQDRQEPG
KFTPENIDPFLCSHLIYSFASIENNKVIIKDKSEVMLYQTINSLKTKNPKLKILLSIG
GYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQKENTHFTVLIH
ELAEAFQKDFTKSTKERLLLTVGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSW
EKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLA
SAETTVGAPASGPGAAGPITESSGFLAYYEICQFLKGAKITRLQDQQVPYAVKGNQWV
GYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDFTGKSCNQGPYPLVQAVKRSLGSL"
BASE COUNT 407 a 356 c 334 g 352 t
ORIGIN
1 gccaaggata tgggagcaac caccatggac cagaagtctc tctgggcagg tgtagtggtc
61 ttgctgcttc tccagggagg atctgcctac aaactggttt gctactttac caactggtcc
121 caggaccggc aggaaccagg aaaattcacc cctgagaata ttgacccctt cctatgctct
181 catctcatct attcattcgc cagcatcgaa aacaacaagg ttatcatcaa ggacaagagt
241 gaagtgatgc tctaccagac catcaacagt ctcaaaacca agaatcccaa actgaaaatt
301 ctcttgtcca ttggagggta cctgtttggt tccaaagggt tccaccctat ggtggattct
361 tctacatcac gcttggaatt cattaactcc ataatcctgt ttctgaggaa ccataacttt
421 gatggactgg atgtaagctg gatctaccca gatcagaaag aaaacactca tttcactgtg
481 ctgattcatg agttagcaga agcctttcag aaggacttca caaaatccac caaggaaagg
541 cttctcttga ctgtgggcgt atctgcaggg aggcaaatga ttgataacag ctatcaagtt
601 gagaaactgg caaaagatct ggatttcatc aacctcctgt cctttgactt ccatgggtct
661 tgggaaaagc cccttatcac tggccacaac agccctctga gcaaggggtg gcaggacaga
721 gggccaagct cctactacaa tgtggaatat gctgtggggt actggataca taagggaatg
781 ccatcagaga aggtggtcat gggcatcccc acatatgggc actccttcac actggcctct
841 gcagaaacca ccgtgggggc ccctgcctct ggccctggag ctgctggacc catcacagag
901 tcttcaggct tcctggccta ttatgagatc tgccagttcc tgaaaggagc caagatcacg
961 cggctccagg atcagcaggt tccctacgca gtcaagggga accagtgggt gggctatgat
1021 gatgtgaaga gtatggagac caaggttcag ttcttaaaga atttaaacct gggaggagcc
1081 atgatctggt ctattgacat ggatgacttc actggcaaat cctgcaacca gggcccttac
1141 cctcttgtcc aagcagtcaa gagaagcctt ggctccctgt gaaggattaa cttacagaga
1201 agcaggcaag atgaccttgc tgcctggggc ctgctctctc ccaggaattc tcatgtggga
1261 ttccccttgc caggccggcc tttggatctc tcttccaagc ctttcctgac ttcctcttag
1321 atcatagatt ggacctggtt ttgttttcct gcagctgttg acttgttgcc ctgaagtaca
1381 ataaaaaaaa ttcattttgc tccagtaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1441 aaaaaaaaa
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