LOCUS BC011026 1676 bp mRNA linear HUM 17-AUG-2004
DEFINITION Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:4290737), partial
cds.
ACCESSION BC011026
VERSION BC011026.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1676)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1676)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: n Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4506792.
FEATURES Location/Qualifiers
source 1..1676
/db_xref="H-InvDB:HIT000087590"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4290737"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene <1..1676
/gene="ATXN1"
/gene_synonym="ATX1"
/gene_synonym="D6S504E"
/gene_synonym="SCA1"
/db_xref="GeneID:6310"
/db_xref="MIM:601556"
CDS <1..345
/gene="ATXN1"
/gene_synonym="ATX1"
/gene_synonym="D6S504E"
/gene_synonym="SCA1"
/codon_start=1
/product="ATXN1 protein"
/protein_id="AAH11026.1"
/db_xref="GeneID:6310"
/db_xref="MIM:601556"
/translation="GEERAEYTADIISTTVAEPYRTCFTAGGSKTSPVEQQPEQQQPQ
DIVSLLLPPLPHATPDPFTLYSHRTESAGGHLFLPQDLRWKSPGLGVFAVQSVYELAR
RHNVSPFYSGPP"
BASE COUNT 514 a 333 c 332 g 497 t
ORIGIN
1 ggggaggaga gagcagagta taccgcagac atcatttcta ctacagtggc ggagccgtac
61 aggacctgtt tcactgcagg gggatccaaa acaagccccg tggagcagca gccagagcaa
121 cagcagccgc aagacattgt ttctctcctt ctgccccccc ttccccacgc aaccccagat
181 ccatttacac tttacagtca cagaacagaa agtgctggtg gacatctctt cttgccccaa
241 gatcttcgtt ggaagtcccc gggacttggt gtctttgccg ttcaaagtgt ttatgaactc
301 gccaggaggc ataatgtgtc accattttat tctgggccac cctaaaggat gacacccagc
361 ttcagagacc tcctcttgga cgacatccct gagaatcaat gttttagctg tcccatagtc
421 tgacgtctgt ttccgaccgc ttttgagctg gcgcaggctt agtcattaat ggccaggacg
481 atgttaaatg ttctgcctga ttggcttgca gctacacacc ttttgtcatt tgcagagcag
541 caactccctc ttgagctctt ggggagtctt tacacaaata cactagaaaa aaggcaccca
601 tccatttttt ttccatcttg gcattagctc acaggcatag tcctgggatg acctggagta
661 gaggcagtgg aggataaatt catcttgcac agacttgttt gtgctagttc tagcctgtct
721 ctcgccacag atctagcttt taaatactca agtgattggt tttgtgtagg aatgtgtgga
781 ttgttggatt ggaagaattt tctccctgga tttctagtgt ttacataagc agatacaaaa
841 aaaatttgat cactgattta aatagcaggg cttattttaa aaagttatgg gtgcttcaag
901 gtggtacaga ataaaaatgt cagggttttt tttttttttt ttttttaaca agtcgtaaca
961 caaccaaaat gtatatatta atgttttgtc aggaaagggt caaaatggaa aatttgcaac
1021 aaagacaaac tacaatagaa caagtgcaaa cagaagctga caaatatatg cccctcgttg
1081 ggagttcagc ccatggaatg ttatgtagga caaaaggaat ggaagagata tttcagtaac
1141 attttgttct ctgtcaaaaa ccttctgaaa tataaatctg ctgtgtattg gagaatggat
1201 acagcaattg attcaagttg aatagctttc atttaactag aatatcccac agaaagcagt
1261 tcttgttctg acaaccatat ttttgctttc tttcacttaa agaaaattga attcatgttt
1321 acatatctta tagggttgtt ttatggacaa agacacgggt caaaccccat cacagtggct
1381 agtgttacaa caaatagaaa catttctaaa tgaaataaca tttctaagcc agggccagtg
1441 cctgcagtaa taatactagg ttggtattat gaagccattt gcaactataa ataattcagt
1501 catagatgtg ctttttttaa aatcctggtt ttttaaaatt ctagtctttt gccaatacac
1561 acacccatac acatacttca cctatttgca taatagagga ggaatatgaa tatgtatata
1621 ataaagtcac tttattttgg acttgcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//