LOCUS BC010703 2047 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stomatin, mRNA (cDNA clone MGC:9177 IMAGE:3873494),
complete cds.
ACCESSION BC010703
VERSION BC010703.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2047)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2047)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: m Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38016910.
FEATURES Location/Qualifiers
source 1..2047
/db_xref="H-InvDB:HIT000035053"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9177 IMAGE:3873494"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2047
/gene="STOM"
/gene_synonym="BND7"
/db_xref="GeneID:2040"
/db_xref="HGNC:HGNC:3383"
/db_xref="MIM:133090"
CDS 40..906
/gene="STOM"
/gene_synonym="BND7"
/codon_start=1
/product="stomatin"
/protein_id="AAH10703.1"
/db_xref="GeneID:2040"
/db_xref="HGNC:HGNC:3383"
/db_xref="MIM:133090"
/translation="MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVI
TFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFD
IPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNL
SQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREAR
AKVIAAEGEMNASRALKEASMVITEYPAALQLRYLQTLTTIAAEKNSTIVFPLPIDML
QGIIGAKHSHLG"
BASE COUNT 563 a 463 c 433 g 588 t
ORIGIN
1 gcaacgagga cgggggagtg cgactgcgtc tcgggcagca tggccgagaa gcggcacaca
61 cgggactccg aagcccagcg gctccccgac tccttcaagg acagccccag taagggcctt
121 ggaccttgcg gatggatttt ggtggcgttc tcattcttat tcaccgttat aactttccca
181 atctcaatat ggatgtgcat aaagattata aaagagtatg aaagagccat catctttaga
241 ttgggtcgca ttttacaagg aggagccaaa ggacctggtt tgttttttat tctgccatgc
301 actgacagct tcatcaaagt ggacatgaga actatttcat ttgatattcc tcctcaggag
361 atcctcacaa aggattcagt gacaattagc gtggatggtg tggtctatta ccgcgttcag
421 aatgcaaccc tggctgtggc aaatatcacc aacgctgact cagcaacccg tcttttggca
481 caaactactc tgaggaatgt tctgggcacc aagaatcttt ctcagatcct ctctgacaga
541 gaagaaattg cacacaacat gcagtctact ctggatgatg ccactgatgc ctggggaata
601 aaggtggagc gtgtggaaat taaggatgtg aaactacctg tgcagctcca gagagctatg
661 gctgcagaag cagaagcgtc ccgcgaggcc cgcgccaagg ttattgcagc cgaaggagaa
721 atgaatgcat ccagggctct gaaagaagcc tccatggtca tcactgaata tcctgcagcc
781 cttcagctcc gatacctgca gacactgacc accattgctg ctgagaaaaa ctcaacaatt
841 gtcttccctc tgcccataga tatgctgcaa ggaatcatag gggcaaaaca cagccatcta
901 ggctagtgta gagatgagcg ctagccttcc aagcatgaag tcggggacca aattagcctt
961 taactcataa agagagggta gggcttttct ttttccatat gtcaattgtg gtgttcccag
1021 aatgtatagc agttataaaa ataggtgaaa gaattgttag cttgtaaata ctgagagatt
1081 ggtgatttat ataaggtaat ctgttagtct taaaatagtt aaaagtttgt atttttagat
1141 tattatgtag taggttagat ccctcttgtt ttgacttcca ctgactcatt ctgaaccccc
1201 taagcaccca ggccagaggc aagaacctgg gctgtaactg ccacctgaca ccgctgactg
1261 gctaaatgct ttgcagaaag tgatgacctt acaccacaac cagcttctcc aggtcatatg
1321 tgccttacct ccagagagtc tttttttttt ttttctgaga tggagtttca ctcttgttgc
1381 ccaggctgga gtgcaatagc atgatctcgg ctcactgcaa cctccgcctc ctgggttcaa
1441 gagattctcc tgcctcagcc tccccagtag ctgggattac aggctcatgc caccatgccc
1501 agctaatttt tgtattatta ttattgtttt ttagtagaga cggggtttca ccatgttggc
1561 caggctagtc acgaactcct aacctcaggt gatccaccca cctctgcctc ccaaagtgct
1621 gggattacag gcatgagcta ccacacctgg tttggagagt cttaattaag gaaatttccc
1681 taatgttcat ttattttcta aatccagacc gtgtttcaga ataatcctta cttgagagta
1741 gccattttct tgcctgtact tgtcagaact agaggaaata gccaagacta atgaaaaaga
1801 ttactctaac ccttaaaaga cttttaaatt cactactaga gtggtcattt taaaaataca
1861 tccatgtttt aacttatttg agccttcttt atgagtaaat gattcctcct tgttctgtct
1921 ttcaaaccag ctaaatattt gtcacaaaag tgcttttttc tcactgttgc ctattttcat
1981 atatcaggtt ttaaatagtt ttaatttttt aataaaattt tctctacgtt ctaaaaaaaa
2041 aaaaaaa
//