LOCUS BC010701 2641 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
domain (TM) and short cytoplasmic domain, (semaphorin) 4B, mRNA
(cDNA clone IMAGE:3855397), partial cds.
ACCESSION BC010701
VERSION BC010701.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2641)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2641)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: c Column: 23.
FEATURES Location/Qualifiers
source 1..2641
/db_xref="H-InvDB:HIT000035052"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3855397"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2641
/gene="SEMA4B"
/gene_synonym="KIAA1745"
/gene_synonym="SemC"
/db_xref="GeneID:10509"
CDS <1..1595
/gene="SEMA4B"
/gene_synonym="KIAA1745"
/gene_synonym="SemC"
/codon_start=3
/product="SEMA4B protein"
/protein_id="AAH10701.2"
/db_xref="GeneID:10509"
/translation="LLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFTSQWHRG
TTEGSAVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSARERKI
NSSLQLPDRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHTYDVLFLG
TGDGRLHKAVSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPMAN
CSLYRSCGDCLLARDPYCAWSGSSCKHVSLYQPQLATRPWIQDIKGASAKDLCSASSV
VSPSFVPTGEKPCEQVQFQPNTVNTLACPLLSNLATRLWLRNGAPVNASASCHVLPTG
DLLLVGTQQLGEFQCWSLEEGFQQLVASYCPEVVEDGVADQTDEGGSVPVIISTSRVS
APAGGKASWGADRSYWKEFLVMCTLFVLAVLLPVLFLLYRHRNSMKVFLKQGECASVH
PKTCPVVLPPETRPLNGLGPPSTPLDHRGYQSLSDSPPGARVFTESEKRPLSIQDSFV
EVSPVCPRPRVRLGSEIRDSVV"
BASE COUNT 541 a 841 c 722 g 537 t
ORIGIN
1 agctgctgtg ctcacggccc gacgatggct tccccttcaa cgtgctgcag gatgtcttca
61 cgctgagccc cagcccccag gactggcgtg acaccctttt ctatggggtc ttcacttccc
121 agtggcacag gggaactaca gaaggctctg ccgtctgtgt cttcacaatg aaggatgtgc
181 agagagtctt cagcggcctc tacaaggagg tgaaccgtga gacacagcag tggtacaccg
241 tgacccaccc ggtgcccaca ccccggcctg gagcgtgcat caccaacagt gcccgggaaa
301 ggaagatcaa ctcatccctg cagctcccag accgcgtgct gaactttctc aaggaccact
361 tcctgatgga cgggcaggtc cgaagccgca tgctgctgct gcagccccag gctcgctacc
421 agcgcgtggc tgtacaccgc gtccctggcc tgcaccacac ctacgatgtc ctcttcctcg
481 gcactggtga cggccggctc cacaaggcag tgagcgtggg cccccgggtg cacatcattg
541 aggagctgca gatcttctca tcgggacagc ccgtgcagaa tctgctcctg gacacccaca
601 gggggctgct gtatgcggcc tcacactcgg gcgtagtcca ggtgcccatg gccaactgca
661 gcctgtaccg gagctgtggg gactgcctcc tcgcccggga cccctactgt gcttggagcg
721 gctccagctg caagcacgtc agcctctacc agcctcagct ggccaccagg ccgtggatcc
781 aggacatcaa gggagccagc gccaaggacc tttgcagcgc gtcttcggtt gtgtccccgt
841 cttttgtacc aacaggggag aagccatgtg agcaagtcca gttccagccc aacacagtga
901 acactttggc ctgcccgctc ctctccaacc tggcgacccg actctggcta cgcaacgggg
961 cccccgtcaa tgcctcggcc tcctgccacg tgctacccac tggggacctg ctgctggtgg
1021 gcacccaaca gctgggggag ttccagtgct ggtcactaga ggagggcttc cagcagctgg
1081 tagccagcta ctgcccagag gtggtggagg acggggtggc agaccaaaca gatgagggtg
1141 gcagtgtacc cgtcattatc agcacatcgc gtgtgagtgc accagctggt ggcaaggcca
1201 gctggggtgc agacaggtcc tactggaagg agttcctggt gatgtgcacg ctctttgtgc
1261 tggccgtgct gctcccagtt ttattcttgc tctaccggca ccggaacagc atgaaagtct
1321 tcctgaagca gggggaatgt gccagcgtgc accccaagac ctgccctgtg gtgctgcccc
1381 ctgagacccg cccactcaac ggcctagggc cccctagcac cccactcgat caccgagggt
1441 accagtccct gtcagacagc cccccggggg cccgagtctt cactgagtca gagaagaggc
1501 cactcagcat ccaagacagc ttcgtggagg tatccccagt gtgcccccgg ccccgggtcc
1561 gccttggctc ggagatccgt gactctgtgg tgtgagagct gacttccaga ggacgctgcc
1621 ctggcttcag gggctgtgaa tgctcggaga gggtcaactg gacctcccct ccgctctgct
1681 cttcgtggaa cacgaccgtg gtgcccggcc cttgggagcc ttggagccag ctggcctgct
1741 gctctccagt caagtagcga agctcctacc acccagacac ccaaacagcc gtggccccag
1801 aggtcctggc caaatatggg ggcctgccta ggttggtgga acagtgctcc ttatgtaaac
1861 tgagcccttt gtttagaaaa caattccaaa tgtgaaacta gaatgagagg gaagagatag
1921 catggcatgc agcacacacg gctgctccag ttcatggcct cccaggggtg ctggggatgc
1981 atccaaagtg gttgtctgag acagagttgg aaaccctcac caactggcct cttcaccttc
2041 cacattatcc cgctgccacc ggctgccctg tctcactgca gattcaggac cagcttgggc
2101 tgcgtgcgtt ctgccttgcc agtcagccga ggatgtagtt gttgctgccg tcgtcccacc
2161 acctcaggga ccagagggct aggttggcac tgcggccctc accaggtcct gggctcggac
2221 ccaactcctg gacctttcca gcctgtatca ggctgtggcc acacgagagg acagcgcgag
2281 ctcaggagag atttcgtgac aatgtacgcc tttccctcag aattcaggga agagactgtc
2341 gcctgccttc ctccgttgtt gcgtgagaac ccgtgtgccc cttcccacca tatccaccct
2401 cgctccatct ttgaactcaa acacgaggaa ctaactgcac cctggtcctc tccccagtcc
2461 ccagttcacc ctccatccct caccttcctc cactctaagg gatatcaaca ctgcccagca
2521 caggggccct gaatttatgt ggtttttata tattttttaa taagatgcac tttatgtcat
2581 tttttaataa agtctgaaga attactgttt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2641 a
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