LOCUS BC010671 2731 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens sphingosine kinase 2, mRNA (cDNA clone MGC:16936
IMAGE:3870258), complete cds.
ACCESSION BC010671
VERSION BC010671.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2731)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2731)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: j Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361698.
FEATURES Location/Qualifiers
source 1..2731
/db_xref="H-InvDB:HIT000035042"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16936 IMAGE:3870258"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2731
/gene="SPHK2"
/db_xref="GeneID:56848"
/db_xref="MIM:607092"
CDS 195..2051
/gene="SPHK2"
/codon_start=1
/product="SPHK2 protein"
/protein_id="AAH10671.1"
/db_xref="GeneID:56848"
/db_xref="MIM:607092"
/translation="MAPPPPPLAASTPLLHGEFGSYPARGPRFALTLTSQALHIQRLR
PKPEARPRGGLVPLAEVSGCCTLRSRSPSDSAAYFCIYTYPRGRRGARRRATRTFRAD
GAATYEENRAEAQRWATALTCLLRGLPLPGDGEITPDLLPRPPRLLLLVNPFGGRGLA
WQWCKNHVLPMISEAGLSFNLIQTERQNHARELVQGLSLSEWDGIVTVSGDGLLHEVL
NGLLDRPDWEEAVKMPVGILPCGSGNALAGAVNQHGGFEPALGLDLLLNCSLLLCRGG
GHPLDLLSVTLASGSRCFSFLSVAWGFVSDVDIQSERFRALGSARFTLGTVLGLATLH
TYRGRLSYLPATVEPASPTPAHSLPRAKSELTLTPDPAPPMAHSPLHRSVSDLPLPLP
QPALASPGSPEPLPILSLNGGGPELAGDWGGAGDAPLSPDPLLSSPPGSPKAALHSPV
SEGAPVIPPSSGLPLPTPDARVGASTCGPPDHLLPPLGTPLPPDWVTLEGDFVLMLAI
SPSHLGADLVAAPHARFDDGLVHLCWVRSGISRAALLRLFLAMERGSHFSLGCPQLGY
AAARAFRLEPLTPRGVLTVDGEQVEYGPLQAQMHPGIGTLLTGPPGCPGREP"
misc_feature 645..1220
/gene="SPHK2"
/note="LCB5; Region: Sphingosine kinase and enzymes
related to eukaryotic diacylglycerol kinase [Lipid
metabolism / General function prediction only]"
/db_xref="CDD:COG1597"
misc_feature 1683..1988
/gene="SPHK2"
/note="LCB5; Region: Sphingosine kinase and enzymes
related to eukaryotic diacylglycerol kinase [Lipid
metabolism / General function prediction only]"
/db_xref="CDD:COG1597"
BASE COUNT 458 a 936 c 847 g 490 t
ORIGIN
1 ggggaacaaa ggtgagcgaa aggaggaggc agaatccggg cagagggcag ggagagggcc
61 tgtggggaag ggacctcagt cctgctccca cccgctccct ggagagcagg cggccagaca
121 cccagaggcc agaccaggag ctgaccggga gctggggcca cgggcctagg agcaccctgg
181 tcagggctaa ggccatggcc ccgcccccac cgccactggc tgccagcacc ccgctcctcc
241 atggcgagtt tggctcctac ccagcccgag gcccacgctt tgccctcacc cttacatcgc
301 aggccctgca catacagcgg ctgcgcccca aacctgaagc caggccccgg ggtggcctgg
361 tcccgttggc cgaggtctca ggctgctgca ccctgcgaag ccgcagcccc tcagactcag
421 cggcctactt ctgcatctac acctaccctc ggggccggcg cggggcccgg cgcagagcca
481 ctcgcacctt ccgggcagat ggggccgcca cctacgaaga gaaccgtgcc gaggcccagc
541 gctgggccac tgccctcacc tgtctgctcc gaggactgcc actgcccggg gatggggaga
601 tcacccctga cctgctacct cggccgcccc ggttgcttct attggtcaat ccctttgggg
661 gtcggggcct ggcctggcag tggtgtaaga accacgtgct tcccatgatc tctgaagctg
721 ggctgtcctt caacctcatc cagacagaac gacagaacca cgcccgggag ctggtccagg
781 ggctgagcct gagtgagtgg gatggcatcg tcacggtctc gggagacggg ctgctccatg
841 aggtgctgaa cgggctccta gatcgccctg actgggagga agctgtgaag atgcctgtgg
901 gcatcctccc ctgcggctcg ggcaacgcgc tggccggagc agtgaaccag cacgggggat
961 ttgagccagc cctgggcctc gacctgttgc tcaactgctc actgttgctg tgccggggtg
1021 gtggccaccc actggacctg ctctccgtga cgctggcctc gggctcccgc tgtttctcct
1081 tcctgtctgt ggcctggggc ttcgtgtcag atgtggatat ccagagcgag cgcttcaggg
1141 ccttgggcag tgcccgcttc acactgggca cggtgctggg cctcgccaca ctgcacacct
1201 accgcggacg cctctcctac ctccccgcca ctgtggaacc tgcctcgccc acccctgccc
1261 atagcctgcc tcgtgccaag tcggagctga ccctaacccc agacccagcc ccgcccatgg
1321 cccactcacc cctgcatcgt tctgtgtctg acctgcctct tcccctgccc cagcctgccc
1381 tggcctctcc tggctcgcca gaacccctgc ccatcctgtc cctcaacggt gggggcccag
1441 agctggctgg ggactggggt ggggctgggg atgctccgct gtccccggac ccactgctgt
1501 cttcacctcc tggctctccc aaggcagctc tacactcacc cgtctccgaa ggggcccccg
1561 taattccccc atcctctggg ctcccacttc ccacccctga tgcccgggta ggggcctcca
1621 cctgcggccc gcccgaccac ctgctgcctc cgctgggcac cccgctgccc ccagactggg
1681 tgacgctgga gggggacttt gtgctcatgt tggccatctc gcccagccac ctaggcgctg
1741 acctggtggc agctccgcat gcgcgcttcg acgacggcct ggtgcacctg tgctgggtgc
1801 gtagcggcat ctcgcgggct gcgctgctgc gccttttctt ggccatggag cgtggtagcc
1861 acttcagcct gggctgtccg cagctgggct acgccgcggc ccgtgccttc cgcctagagc
1921 cgctcacacc acgcggcgtg ctcacagtgg acggggagca ggtggagtat gggccgctac
1981 aggcacagat gcaccctggc atcggtacac tgctcactgg gcctcctggc tgcccggggc
2041 gggagccctg aaactaaaca agcttggtac ccgccggggg cggggcctac attccaatgg
2101 ggcggagcct gagctagggg gtgtggcctg gctgctagag ttgtggtggc aggggccctg
2161 gccccgtctc aggattgcgc tcgctttcat gggaccagac gtgatgctgg aaggtgggcg
2221 tcgtcacggt taaagagaaa tgggctcgtc ccgagggtag tgcctgatca atgagggcgg
2281 ggcctggcgt ctgatctggg gccgccctta cggggcaggg ctcagtcctg acgcttgcca
2341 cctgctccta cccggccagg atggctgagg gcggagtcta ttttacgcgt cgcccaatga
2401 caggacctgg aatgtactgg ctggggtagg cctcagtgag tcggccggtc agggcccgca
2461 gcctcgcccc atccactccg gtgcctccat ttagctggcc aatcagccca ggaggggcag
2521 gttccccggg gccggcgcta ggatttgcac taatgttcct ctccccgcgg gtgggggcgg
2581 ggaaattcat atcccctgtt cgtctcatgc gcgtcctccg tccccaatct aaaaagcaat
2641 tgaaaaggtc tatgcaataa aggcagtcgc ttcattcctc tcaaaaaaaa aaaaaaaaaa
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//