LOCUS BC010570 1583 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase,
mRNA (cDNA clone MGC:17215 IMAGE:4178704), complete cds.
ACCESSION BC010570
VERSION BC010570.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1583)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1583)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: i Column: 3.
FEATURES Location/Qualifiers
source 1..1583
/db_xref="H-InvDB:HIT000035002"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17215 IMAGE:4178704"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1583
/gene="HMGCL"
/gene_synonym="HL"
/db_xref="GeneID:3155"
/db_xref="HGNC:HGNC:5005"
/db_xref="MIM:246450"
CDS 11..988
/gene="HMGCL"
/gene_synonym="HL"
/codon_start=1
/product="3-hydroxymethyl-3-methylglutaryl-Coenzyme A
lyase"
/protein_id="AAH10570.1"
/db_xref="GeneID:3155"
/db_xref="HGNC:HGNC:5005"
/db_xref="MIM:246450"
/translation="MAAMRKALPRRLVGLASLRAVSTSSMGTLPKRVKIVEVGPRDGL
QNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGIN
YPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSA
NISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDML
SAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNL
ATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL"
BASE COUNT 393 a 396 c 438 g 356 t
ORIGIN
1 ctgggccaag atggcagcaa tgaggaaggc gcttccgcgg cgactggtgg gcttggcgtc
61 cctccgggct gtcagcacct catctatggg cactttacca aagcgggtga aaattgtgga
121 agttggtccc cgagatggac tacaaaatga aaagaatatc gtatctactc cagtgaaaat
181 caagctgata gacatgcttt ctgaagcagg actctctgtt atagaaacca ccagctttgt
241 gtctcctaag tgggttcccc agatgggtga ccacactgaa gtcttgaagg gcattcagaa
301 gtttcctggc atcaactacc cagtcctgac cccaaatttg aaaggcttcg aggcagcggt
361 tgctgctgga gccaaggaag tagtcatctt tggagctgcc tcagagctct tcaccaagaa
421 gaacatcaat tgttccatag aggagagttt tcagaggttt gacgcaatcc tgaaggcagc
481 gcagtcagcc aatatttctg tgcgggggta cgtctcctgt gctcttggct gcccttatga
541 agggaagatc tccccagcta aagtagctga ggtcaccaag aagttctact caatgggctg
601 ctacgagatc tccctggggg acaccattgg tgtgggcacc ccagggatca tgaaagacat
661 gctgtctgct gtcatgcagg aagtgcctct ggctgccctg gctgtccact gccatgacac
721 ctatggtcaa gccctggcca acaccttgat ggccctgcag atgggagtga gtgtcgtgga
781 ctcttctgtg gcaggacttg gaggctgtcc ctacgcacag ggggcatcag gaaacttggc
841 cacagaagac ctggtctaca tgctagaggg cttgggcatt cacacgggtg tgaatctcca
901 gaagcttctg gaagctggaa actttatctg tcaagccctg aacagaaaaa ctagctccaa
961 agtggctcag gctacctgta aactctgagc cccttgccca cctgaagccc tggggatgat
1021 gtggaaatag gggcacacac agatgattca tggatgggga catggaaatg agaataggtt
1081 aaatggtgca ggtacctcat agccagctct acacagaggt ctctcctggc agaaagcagg
1141 cgaagggcag gaggagctgc ttggcagaag gacctcctgc ccagacctga ggagtgagag
1201 gctttgaggg ctgaagtctc cctttgttac ggaccctggc ccaggagttg aatgcctgag
1261 gacgtgtggg aaccccgttc cctacttagc atgatccttg agtctcctct ctggatggaa
1321 tccgcgagct ggccacctgg ccaccctcta cacggctcca ccctgccatg gccgtggggc
1381 ccttgctctc tgacttctca ggacacaggt catggaggtt cttcccaagc tggcagaggc
1441 catttgtgga aagtggagag ctacgtggtg gccatctgcc aactccagca tctctggaaa
1501 atctccacgc tgaatgtgat ttttgaaaac agcttatgta attaaaggtt gaatggcaca
1561 tcataaaaaa aaaaaaaaaa aaa
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