LOCUS BC010501 2612 bp mRNA linear HUM 04-JUN-2004
DEFINITION Homo sapiens catenin (cadherin-associated protein), delta 1, mRNA
(cDNA clone IMAGE:3450203), partial cds.
ACCESSION BC010501
VERSION BC010501.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2612)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2612)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: k Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2612
/db_xref="H-InvDB:HIT000034970"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3450203"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2612
/gene="CTNND1"
/gene_synonym="CAS"
/gene_synonym="CTNND"
/gene_synonym="KIAA0384"
/gene_synonym="P120CAS"
/gene_synonym="P120CTN"
/db_xref="GeneID:1500"
/db_xref="MIM:601045"
CDS <1..2494
/gene="CTNND1"
/gene_synonym="CAS"
/gene_synonym="CTNND"
/gene_synonym="KIAA0384"
/gene_synonym="P120CAS"
/gene_synonym="P120CTN"
/codon_start=2
/product="CTNND1 protein"
/protein_id="AAH10501.2"
/db_xref="GeneID:1500"
/db_xref="MIM:601045"
/translation="EPGQIVETYTEEDPEGAMSVVSVETSDDGTTRRTETTVKKVVKT
VTTRTVQPVAMGPDGLPVDASSVSNNYIQTLGRDFRKNGNGGPGPYVGQAGTATLPRN
FHYPPDGYSRHYEDGYPGGSDNYGSLSRVTRIEERYRPSMEGYRAPSRQDVYGPQPQV
RVGGSSVDLHRFHPEPYGLEDDQRSMGYDDLDYGMMSDYGTARRTGTPSDPRRRLRSY
EDMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL
DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF
GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALH
ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDG
LVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNT
GPHAASCFGAKKGKGKKPIEDPANDTVDFPKRTSPARGYELLFQPEVVRIYISLLKES
KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA
LRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE
AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDF
QVNLNNASRSQSSHSYDDSTLPLIDRNQKSDKKPDREEIQMSNMGSNTKSLDNNYSTP
NERGDHNKTLDRSGDLGDMEPLKGTTPLMQKI"
BASE COUNT 761 a 579 c 686 g 586 t
ORIGIN
1 ggagccgggg cagattgtgg agacctacac ggaggaggat cctgagggag ccatgtctgt
61 agtctctgtg gagacctcag atgatgggac cactcggcgc acagagacca cggtcaagaa
121 agtagtgaag actgtgacaa cacggacagt acagccagtc gctatgggac cagacgggtt
181 gcctgtggat gcttcatcag tttctaacaa ctatatccag actttgggtc gtgatttccg
241 caagaatggc aatgggggac ctggtcccta tgtggggcaa gctggcactg ctacccttcc
301 taggaacttc cactaccctc ctgatggtta tagtcgccac tatgaagatg gttatccagg
361 tggcagtgat aactatggca gtctgtcccg ggtgacccgc attgaggagc ggtataggcc
421 cagcatggaa ggctaccggg cacctagtag acaggatgtg tatgggcccc aaccccaggt
481 tcgggtaggt gggagcagcg tggatctgca tcgctttcat ccagagcctt atgggctaga
541 ggatgaccag cgtagtatgg gctatgatga cctggattat ggtatgatgt ctgattatgg
601 cactgcccgt cggactggga caccctctga ccctcgtcgg cgcctcagga gctatgaaga
661 catgattggt gaggaggtgc catcggatca atactactgg gctcctttgg cccagcatga
721 gcgaggaagt ttagcaagct tggatagcct gcgcaaagga gggcctccac ctcctaattg
781 gagacagcca gagctgccag aggtgatcgc catgcttgga ttccgcttgg atgctgtcaa
841 gtccaatgca gctgcatacc tgcaacactt atgctaccgc aatgacaagg tgaagactga
901 cgtgcggaag ctcaagggca tcccagtact ggtgggattg ttagaccatc ccaaaaagga
961 agtgcacctt ggagcctgtg gagctctcaa gaatatctct tttggacgtg accaggataa
1021 caagattgcc ataaaaaact gtgatggtgt gcctgccctt gtgcgattgc ttcgaaaggc
1081 tcgtgatatg gaccttactg aagttattac cggaaccctg tggaatcttt catcccatga
1141 ctcaatcaaa atggagattg tggaccatgc actgcatgcc ttgacagatg aagtgatcat
1201 tcctcattct ggttgggagc gggaacctaa tgaagactgt aagccacgcc atattgagtg
1261 ggaatcggtg ctcaccaaca cagctggctg ccttaggaat gtaagctcag agaggagtga
1321 agctcgccgg aaacttcggg aatgtgatgg tttagttgat gccctcattt tcattgttca
1381 ggctgagatt gggcagaagg attcagacag caagcttgta gagaactgtg tttgccttct
1441 tcggaactta tcatatcaag ttcaccggga gatcccacag gcagagcgtt accaagaggc
1501 agctcccaat gttgccaaca atactgggcc acatgctgcc agttgctttg gggccaagaa
1561 gggcaaaggg aaaaaaccta tagaggatcc agcaaacgat acagtggatt tccctaaaag
1621 aacgagtcca gctcgaggct atgagctctt atttcagcca gaggtggttc ggatatacat
1681 ctcacttctt aaggagagca agactcctgc catcctagaa gcctcagctg gagctatcca
1741 gaacttgtgt gctgggcgct ggacgtatgg tcgatacatc cgctctgctc tgcgtcaaga
1801 gaaggctctt tctgccatag ctgacctcct gactaatgaa catgaacggg tggtgaaagc
1861 tgcatctgga gcactgagaa acctggctgt ggatgctcgc aacaaagaat taattggtaa
1921 acatgctatt cctaacttgg taaagaatct gccaggagga cagcagaact cctcttggaa
1981 tttctctgag gacactgtca tctctatttt gaacactatc aacgaggtta tcgctgagaa
2041 cttggaggct gccaaaaagc ttcgagagac acagggtatt gagaagctgg tgttgatcaa
2101 caaatcaggg aaccgctcag aaaaagaagt tcgagcagca gcacttgtat tacagacaat
2161 ctggggatat aaggaactgc ggaagccact ggaaaaagaa ggatggaaga aatcagactt
2221 tcaggtgaat ctaaacaatg cttcccgaag ccagagcagt cattcatatg atgatagtac
2281 tctccctctc attgaccgga accaaaaatc agataagaaa cctgatcggg aagaaattca
2341 gatgagcaat atgggatcaa acacaaaatc actagataac aactattcca caccaaatga
2401 gagaggagac cacaataaaa cactggatcg atcgggggat ctaggcgaca tggagccatt
2461 gaagggaaca acacccttga tgcagaagat ttagcaccac tatctccgtt ccatctgggc
2521 ttatatgtac ttttattttt tggtggtgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//