LOCUS BC010425 2220 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens acyl-Coenzyme A oxidase 1, palmitoyl, mRNA (cDNA clone
MGC:15225 IMAGE:3357409), complete cds.
ACCESSION BC010425
VERSION BC010425.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2220)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2220)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: a Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34304338.
FEATURES Location/Qualifiers
source 1..2220
/db_xref="H-InvDB:HIT000034934"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15225 IMAGE:3357409"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2220
/gene="ACOX1"
/gene_synonym="ACOX"
/gene_synonym="MGC1198"
/gene_synonym="PALMCOX"
/gene_synonym="SCOX"
/db_xref="GeneID:51"
/db_xref="HGNC:HGNC:119"
/db_xref="MIM:609751"
CDS 80..2062
/gene="ACOX1"
/gene_synonym="ACOX"
/gene_synonym="MGC1198"
/gene_synonym="PALMCOX"
/gene_synonym="SCOX"
/codon_start=1
/product="acyl-Coenzyme A oxidase 1, palmitoyl"
/protein_id="AAH10425.1"
/db_xref="GeneID:51"
/db_xref="HGNC:HGNC:119"
/db_xref="MIM:609751"
/translation="MNPDLRRERDSASFNPELLTHILDGSPEKTRRRREIENMILNDP
DFQHEDLNFLTRSQRYEVAVRKSAIMVKKMREFGIADPDEIMWFKNFVHRGRPEPLDL
HLGMFLPTLLHQATAEQQERFFMPAWNLEIIGTYAQTEMGHGTHLRGLETIATYDPET
QEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITKGKCYGLHAFIVPIREIGTHKPL
PGITVGDIGPKFGYDEIDNGYLKMDNHRIPRENMLMKYAQVKPDGTYVKPLSNKLTYG
TMVFVRSFLVGEAARALSKACTIAIRYSAVRHQSEMKPGEPEPQILDFQTQQYKLFPL
LATAYAFQFVGAYMKETYHRINEGIGQGDLSELPELHALTAGLKAFTSWTANTGIEAC
RMACGGHGYSHCSGLPNIYVNFTPSCTFEGENTVMMLQTARFLMKSYDQVHSGKLVCG
MVSYLNDLPSQRIQPQQVAVWPTMVDINSPESLTEAYKLRAARLVEIAAKNLQKEVIH
RKSKEVAWNLTSVDLVRASEAHCHYVVVKLFSEKLLKIQDKAIQAVLRSLCLLYSLYG
ISQNAGDFLQGSIMTEPQITQVNQRVKELLTLIRSDAVALVDAFDFQDVTLGSVLGRY
DGNVYENLFEWAKNSPLNKAEVHESYKHLKSLQSKL"
BASE COUNT 599 a 531 c 550 g 540 t
ORIGIN
1 ggccggcgct ggagctgcgg atttagattg tcactgccac ctcggtcggt gcttacttcg
61 ctgccagctg gtcgtcgcca tgaacccgga cctgcgcagg gagcgggatt ccgccagctt
121 caacccggag ctgcttacac acatcctgga cggcagcccc gagaaaaccc ggcgccgccg
181 agagatcgag aacatgatcc tgaacgaccc agacttccag catgaggact tgaacttcct
241 cactcgcagc cagcgttatg aggtggctgt caggaaaagt gccatcatgg tgaagaagat
301 gagggagttt ggcatcgctg accctgatga aattatgtgg tttaaaaatt ttgtgcaccg
361 agggcggcct gagcctctgg atcttcactt gggcatgttc ctgcccacct tgcttcacca
421 ggcaactgcg gagcagcagg agcgcttctt catgcccgcc tggaacttgg agatcattgg
481 cacttatgcc cagacagaga tgggtcatgg aactcacctt cgaggcttgg aaaccatagc
541 cacgtatgac cctgaaaccc aggagttcat tctcaacagt cctactgtga cctccattaa
601 atggtggcct ggtgggcttg gaaagacttc aaatcatgca atagttcttg cccagctcat
661 cactaagggg aaatgctatg gattacatgc ctttatcgta cctattcgtg aaatcgggac
721 ccataagcct ttgccaggaa ttaccgttgg tgacatcggc cccaaatttg gttatgatga
781 gatagacaat ggctacctca aaatggacaa ccatcgtatt cccagagaaa acatgctgat
841 gaagtatgcc caggtgaagc ctgatggcac atacgtgaaa ccgctgagta acaagctgac
901 ttacgggacc atggtgtttg tcaggtcctt ccttgtggga gaagctgctc gggctctgtc
961 taaggcgtgc accattgcca tccgatacag cgctgtgagg caccagtctg aaatgaagcc
1021 aggtgaacca gaaccacaga ttttggattt tcaaacccag cagtataaac tctttccact
1081 cctggccact gcctatgcct tccagtttgt gggcgcatac atgaaggaga cctatcaccg
1141 gattaacgaa ggcattggtc aaggggacct gagtgaactg cctgagcttc atgccctcac
1201 cgctggactg aaggctttca cctcctggac tgcaaacact ggcattgaag catgtcggat
1261 ggcttgtggt gggcatggct attctcattg cagtggtctt ccaaatattt atgtcaattt
1321 caccccaagc tgtacctttg agggagaaaa cactgtcatg atgctccaga cggctaggtt
1381 cctgatgaaa agttatgatc aggtgcactc aggaaagttg gtgtgtggca tggtgtccta
1441 tttgaacgac ctgcccagtc agcgcatcca gccacagcag gtagcagtct ggccaaccat
1501 ggtggatatc aacagccccg aaagcctaac cgaagcatat aaactccgtg cagccagatt
1561 agtagaaatt gctgcaaaaa accttcaaaa agaagtgatt cacagaaaaa gcaaggaggt
1621 agcttggaac ctaacttctg ttgaccttgt tcgagcaagt gaggcacatt gccactatgt
1681 ggtagttaag ctcttttcag aaaaactcct caaaattcaa gataaagcca ttcaagctgt
1741 cttaaggagt ttatgtctgc tgtattctct gtatggaatc agtcagaacg cgggggattt
1801 ccttcagggg agcatcatga cagagcctca gattacacaa gtaaaccagc gtgtaaagga
1861 gttactcact ctgattcgct cagatgctgt tgctttggtt gatgcatttg attttcagga
1921 tgtgacactt ggctctgtgc ttggccgcta tgatgggaat gtgtatgaaa acttgtttga
1981 gtgggctaag aactccccac tgaacaaagc agaggtccac gaatcttaca agcacctgaa
2041 gtcactgcag tccaagctct gaagtgtcac aaggacaagt ttaatctgct tcagaaagcg
2101 cctgtgtgca actcaaattt tgtggaatct ttttcgaatt caaatagcta tagagcaaat
2161 gataaattga ccccttttta taaatggagg gaaaaaatga acaaaaaaaa aaaaaaaaaa
//