LOCUS BC010362 2698 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens vacuolar protein sorting 35 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:13402 IMAGE:4249949), complete cds.
ACCESSION BC010362
VERSION BC010362.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2698)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2698)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41352714.
FEATURES Location/Qualifiers
source 1..2698
/db_xref="H-InvDB:HIT000034898"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13402 IMAGE:4249949"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2698
/gene="VPS35"
/gene_synonym="DKFZp434E1211"
/gene_synonym="DKFZp434P1672"
/gene_synonym="MEM3"
/db_xref="GeneID:55737"
/db_xref="HGNC:HGNC:13487"
/db_xref="MIM:606931"
CDS 21..2411
/gene="VPS35"
/gene_synonym="DKFZp434E1211"
/gene_synonym="DKFZp434P1672"
/gene_synonym="MEM3"
/codon_start=1
/product="vacuolar protein sorting 35 homolog (S.
cerevisiae)"
/protein_id="AAH10362.1"
/db_xref="GeneID:55737"
/db_xref="HGNC:HGNC:13487"
/db_xref="MIM:606931"
/translation="MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALK
HASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAG
NIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNI
LPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRI
LVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHL
QTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVAT
VIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSS
AVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTE
IVFQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYL
ILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQ
TISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQ
LAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRN
TDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTI
QVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLIL"
BASE COUNT 827 a 535 c 584 g 752 t
ORIGIN
1 gggggctctg gggagtcgcc atgcctacaa cacagcagtc ccctcaggat gagcaggaaa
61 agctcttgga tgaagccata caggctgtga aggtccagtc attccaaatg aagagatgcc
121 tggacaaaaa caagcttatg gatgctctaa aacatgcttc taatatgctt ggtgaactcc
181 ggacttctat gttatcacca aagagttact atgaacttta tatggccatt tctgatgaac
241 tgcactactt ggaggtctac ctgacagatg agtttgctaa aggaaggaaa gtggcagatc
301 tctacgaact tgtacagtat gctggaaaca ttatcccaag gctttacctt ttgatcacag
361 ttggagttgt atatgtcaag tcatttcctc agtccaggaa ggatattttg aaagatttgg
421 tagaaatgtg ccgtggtgtg caacatccct tgaggggtct gtttcttcga aattaccttc
481 ttcagtgtac cagaaatatc ttacctgatg aaggagagcc aacagatgaa gaaacaactg
541 gtgacatcag tgattccatg gattttgtac tgctcaactt tgcagaaatg aacaagctct
601 gggtgcgaat gcagcatcag ggacatagcc gagatagaga aaaaagagaa cgagaaagac
661 aagaactgag aattttagtg ggaacaaatt tggtgcgcct cagtcagttg gaaggtgtaa
721 atgtggaacg ttacaaacag attgttttga ctggcatatt ggagcaagtt gtaaactgta
781 gggatgcttt ggctcaagaa tatctcatgg agtgtattat tcaggttttc cctgatgaat
841 ttcacctcca gactttgaat ccttttcttc gggcctgtgc tgagttacac cagaatgtaa
901 atgtgaagaa cataatcatt gctttaattg atagattagc tttatttgct caccgtgaag
961 atggacctgg aatcccagcg gatattaaac tttttgatat attttcacag caggtggcta
1021 cagtgataca gtctagacaa gacatgcctt cagaggatgt tgtatcttta caagtctctc
1081 tgattaatct tgccatgaaa tgttaccctg atcgtgtgga ctatgttgat aaagttctag
1141 aaacaacagt ggagatattc aataagctca accttgaaca tattgctacc agtagtgcag
1201 tttcaaagga actcaccaga cttttgaaaa taccagttga cacttacaac aatattttaa
1261 cagtcttgaa attaaaacat tttcacccac tctttgagta ctttgactac gagtccagaa
1321 agagcatgag ttgttatgtg cttagtaatg ttctggatta taacacagaa attgtctttc
1381 aagaccaggt ggattccata atgaatttgg tatccacgtt gattcaagat cagccagatc
1441 aacctgtaga agaccctgat ccagaagatt ttgctgatga gcagagcctt gtgggccgct
1501 tcattcatct gctgcgctct gaggaccctg accagcagta cttgattttg aacacagcac
1561 gaaaacattt tggagctggt ggaaatcagc ggattcgctt cacactgcca cctttggtat
1621 ttgcagctta ccagctggct tttcgatata aagagaattc taaagtggat gacaaatggg
1681 aaaagaaatg ccagaagatt ttttcatttg cccaccagac tatcagtgct ttgatcaaag
1741 cagagctggc agaattgccc ttaagacttt ttcttcaagg agcactagct gctggggaaa
1801 ttggttttga aaatcatgag acagtcgcat atgaattcat gtcccaggca ttttctctgt
1861 atgaagatga aatcagcgat tccaaagcac agctagctgc catcaccttg atcattggca
1921 cttttgaaag gatgaagtgc ttcagtgaag agaatcatga acctctgagg actcagtgtg
1981 cccttgctgc atccaaactt ctaaagaaac ctgatcaggg ccgagctgtg agcacctgtg
2041 cacatctctt ctggtctggc agaaacacgg acaaaaatgg ggaggagctt cacggaggca
2101 agagggtaat ggagtgccta aaaaaagctc taaaaatagc aaatcagtgc atggacccct
2161 ctctacaagt gcagcttttt atagaaattc tgaacagata tatctatttt tatgaaaagg
2221 aaaatgatgc ggtaacaatt caggttttaa accagcttat ccaaaagatt cgagaagacc
2281 tcccgaatct tgaatccagt gaagaaacag agcagattaa caaacatttt cataacacac
2341 tggagcattt gcgcttgcgg cgggaatcac cagaatccga ggggccaatt tatgaaggtc
2401 tcatccttta aaaaggaaat agctcaccat actcctttcc atgtacatcc agtgagggtt
2461 ttattacgct aggtttccct tccatagatt gtgcctttca gaaatgctga ggtaggtttc
2521 ccatttctta cctgtgatgt gttttaccca gcacctccgg acactcacct tcaggacctt
2581 aataaaatta ttcacttggt aagtgttcaa gtctttctga tcaccccaag tagcatgact
2641 gatctgcaat ttaaaattcc tgtgatctgc aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//