LOCUS BC010239 2164 bp mRNA linear HUM 23-AUG-2004
DEFINITION Homo sapiens ataxin 2-like, mRNA (cDNA clone IMAGE:4153822),
partial cds.
ACCESSION BC010239
VERSION BC010239.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2164)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2164)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (05-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC010239.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: p Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2164
/db_xref="H-InvDB:HIT000087462"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4153822"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2164
/gene="ATXN2L"
/gene_synonym="A2D"
/gene_synonym="A2LG"
/gene_synonym="A2LP"
/gene_synonym="A2RP"
/db_xref="GeneID:11273"
/db_xref="MIM:607931"
CDS <1..1206
/gene="ATXN2L"
/gene_synonym="A2D"
/gene_synonym="A2LG"
/gene_synonym="A2LP"
/gene_synonym="A2RP"
/codon_start=1
/product="ATXN2L protein"
/protein_id="AAH10239.1"
/db_xref="GeneID:11273"
/db_xref="MIM:607931"
/translation="NKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHM
GPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPP
LVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIV
SSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSP
VQQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHH
QQLPHGFTNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQS
GVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRIREFSLAGGIWHGRAEGLQVG
QDARVLGGE"
BASE COUNT 428 a 782 c 544 g 410 t
ORIGIN
1 aataaatcca ccagtacccc aacttctccg gggccccgga ctcattcaac tccctccatc
61 ccggtgctga cagcaggcca gagtgggcta tacagccccc agtacatctc ctacatacct
121 cagatccaca tgggaccagc tgtgcaggca cctcagatgt atccatatcc tgtatccaat
181 tcagtgcctg ggcagcaggg caagtaccgg ggagcaaaag gctcccttcc tccgcagcgc
241 tcggaccaac accagccagc ctcagccccg ccgatgatgc aggccgccgc ggctgctggc
301 ccgcctctgg tggctgccac gccctattct tcctacatcc cctacaaccc tcagcagttc
361 ccaggccagc cagccatgat gcagcccatg gcccactacc cctcacagcc ggtgtttgcc
421 cccatgcttc agagcaaccc acgcatgctg acgtcgggca gccatcccca ggccatcgtg
481 tcatcctcta cccctcagta cccttctgca gagcagccta ccccccaagc cctttatgcc
541 actgttcacc agtcctaccc acaccatgcc acacagctcc atgcccacca gccgcagccg
601 gctaccacgc ctactggaag ccagccgcag tcccagcatg cggcccccag tcctgtccag
661 cagcatcagg cggggcaggc cccacacttg ggcagtggac agccacagca gaatctgtac
721 cacccagggg ccctgacagg cacgccgccc tctctgccac cgggaccttc tgcccagtcc
781 cctcagagca gcttccccca gccagccgct gtgtatgcca tccaccacca gcagctgccc
841 cacggcttca ccaacatggc ccatgttacc caggcccatg tccaaactgg aatcacagca
901 gccccgcccc ctcaccctgg ggctccccac ccgccccagg tgatgctgct gcacccaccc
961 cagagtcatg gggggccccc ccaaggcgcg gtgccccaga gtggggtgcc tgcactctca
1021 gcttccacac cctcacccta cccctacatc ggacaccccc aaggtgagca gcctggccag
1081 gcgcctggat ttccaggagg agccgatgac aggattcgtg agttctcatt agctggggga
1141 atttggcatg gaagagctga ggggctgcag gtggggcagg atgcacgggt tctgggtggg
1201 gagtgagggg tcttggaggc agggctgtcc cacagggcgc ccgccgacct gcacctgtct
1261 gtgaagtatg tagggtgggc agaagccaca gtcgccgccg ccaggggctt gctcctggct
1321 ctgtcctttg cttccctccg tcctcgctca gttgtgatcc agcagccccc ctccccactg
1381 cctccccagc tctcagtgac cccgactgtc tcctgactta gccgaggtaa ggtcagtgca
1441 gcagacaggg ccagactggg gtgtgggggg ctgagctggg cacatgagtg agggctctgg
1501 cttactggga aacagcgatt gacctgtgct tctgacagcc cccgagacac cttgaggagg
1561 ccgctccttc ccagacacac ccccacgccc ccactggacg gcattggagg aagggacagc
1621 tgcttgggtt ctaatgctcc tgctctcttc tctttcccct ccaaccagtt caatctcatc
1681 cctcccagca gctccccttc caccccccgg ggaactgaag attgtcctgg ccgcgacctg
1741 agacctccat gagtggaggg aagagtgatc tatgtctctt cccccagcag ctcggaccac
1801 tcccagcccc ccatcccccc gttccccagg ggagctgggg aattcctgcc aagcaccttg
1861 aatgggaggg gcctcacaga gggcagggcc agggtccagc aggggtgggg ggttcctgct
1921 ctgcccctgc ccgtccccac ccagtcttgc cctcccatcc tctcatctat tcccccgctg
1981 gagacggaag atcttttatt ttctattatt tataacttca gacttgggcc ccctgttctt
2041 tctttcccat taacttgagt gacctgtgtg agagacagac agatgcccca cgaggatggc
2101 tggacaagga cttttacttt ttattacata aaaatattaa aaaataaata aaaaaaaaaa
2161 aaaa
//