LOCUS BC010115 2394 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens Friend leukemia virus integration 1, mRNA (cDNA clone
MGC:19589 IMAGE:3635042), complete cds.
ACCESSION BC010115
VERSION BC010115.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2394)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2394)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: g Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7110592.
FEATURES Location/Qualifiers
source 1..2394
/db_xref="H-InvDB:HIT000034811"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19589 IMAGE:3635042"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2394
/gene="FLI1"
/gene_synonym="EWSR2"
/gene_synonym="SIC-1"
/db_xref="GeneID:2313"
/db_xref="MIM:193067"
CDS 126..1484
/gene="FLI1"
/gene_synonym="EWSR2"
/gene_synonym="SIC-1"
/codon_start=1
/product="FLI1 protein"
/protein_id="AAH10115.1"
/db_xref="GeneID:2313"
/db_xref="MIM:193067"
/translation="MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQ
PHKINPLPPQQEWINQPVRVNVKREYDHMNGSRESPVDCSVSKCSKLVGGGESNPMNY
NSYMDEKNGPPPPNMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQ
NMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESSLLAYNTTSHTDQSSRLSVKE
DPSYDSVRRGAWGNNMNSGLNKSPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANP
GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDK
LSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTESSMYKYPSDISYMPSYH
AHQQKVNFVPPHPSSMPVTSSSFFGAASQYWTSPTGGIYPNPNVPRHPNTHVPSHLGS
YY"
misc_feature 465..719
/gene="FLI1"
/gene_synonym="EWSR2"
/gene_synonym="SIC-1"
/note="SAM_PNT; Region: SAM / Pointed domain"
/db_xref="CDD:smart00251"
misc_feature 963..1214
/gene="FLI1"
/gene_synonym="EWSR2"
/gene_synonym="SIC-1"
/note="Ets; Region: Ets-domain"
/db_xref="CDD:pfam00178"
BASE COUNT 669 a 609 c 574 g 542 t
ORIGIN
1 ggcacgaggg gagggcccag ggcgccaggg aggccgcgcc gggctaatcc gaaggggctg
61 cgaggtcagg ctgtaaccgg gtcaatgtgt ggaatattgg ggggctcggc tgcagacttg
121 gccaaatgga cgggactatt aaggaggctc tgtcggtggt gagcgacgac cagtccctct
181 ttgactcagc gtacggagcg gcagcccatc tccccaaggc cgacatgact gcctcgggga
241 gtcctgacta cgggcagccc cacaagatca accccctccc accacagcag gagtggatca
301 atcagccagt gagggtcaac gtcaagcggg agtatgacca catgaatgga tccagggagt
361 ctccggtgga ctgcagcgtt agcaaatgca gcaagctggt gggcggaggc gagtccaacc
421 ccatgaacta caacagctat atggacgaga agaatggccc ccctcctccc aacatgacca
481 ccaacgagag gagagtcatc gtccccgcag accccacact gtggacacag gagcatgtga
541 ggcaatggct ggagtgggcc ataaaggagt acagcttgat ggagatcgac acatcctttt
601 tccagaacat ggatggcaag gaactgtgta aaatgaacaa ggaggacttc ctccgcgcca
661 ccaccctcta caacacggaa gtgctgttgt cacacctcag ttacctcagg gaaagttcac
721 tgctggccta taatacaacc tcccacaccg accaatcctc acgattgagt gtcaaagaag
781 acccttctta tgactcagtc agaagaggag cttggggcaa taacatgaat tctggcctca
841 acaaaagtcc tccccttgga ggggcacaaa cgatcagtaa gaatacagag caacggcccc
901 agccagatcc gtatcagatc ctgggcccga ccagcagtcg cctagccaac cctggaagcg
961 ggcagatcca gctgtggcaa ttcctcctgg agctgctctc cgacagcgcc aacgccagct
1021 gtatcacctg ggaggggacc aacggggagt tcaaaatgac ggaccccgat gaggtggcca
1081 ggcgctgggg cgagcggaaa agcaagccca acatgaatta cgacaagctg agccgggccc
1141 tccgttatta ctatgataaa aacattatga ccaaagtgca cggcaaaaga tatgcttaca
1201 aatttgactt ccacggcatt gcccaggctc tgcagccaca tccgaccgag tcgtccatgt
1261 acaagtaccc ttctgacatc tcctacatgc cttcctacca tgcccaccag cagaaggtga
1321 actttgtccc tccccatcca tcctccatgc ctgtcacttc ctccagcttc tttggagccg
1381 catcacaata ctggacctcc cccacggggg gaatctaccc caaccccaac gtcccccgcc
1441 atcctaacac ccacgtgcct tcacacttag gcagctacta ctagaagctt actcatcagt
1501 ggccttctag ctgaagccca tcctgcacac ttactggatg ctttggactc aacaggacat
1561 atgtggcctt gaagggaaga caaaactgga tgttctttct tgttggatag aacctttgta
1621 tttgttcttt aaaaacattt tttttaatgt tggtaacttt tgcttcctct acctgaacaa
1681 agagatgaat aattccatgg gccagtatgc cagtttgaat tctcagtctc ctagcatctt
1741 gtgagttgca tattaagatt actggaatgg ttaagtcatg gttctgagaa agaagctgta
1801 cgttttcttt atgtttttat gaccaaagca gtttcttgtc aatacacggg gttcagtatg
1861 acacagaatc atggacttaa cccgtcatgt tctggtttga gatttagtga caaatagagg
1921 tgggaagctt ataatctaat tttaggagga ccaaattcag tggatggcaa ctggaacatt
1981 gattgtaagg ccagtgaagt tttcacccaa ctggaatttg atggaaagaa ggtttgtgtg
2041 tttaagacgc caagggcatt gcagaatccc tctcagtgga cagtatgcac tcagctgacc
2101 actctctcta gaaatagtca agatatgaac taagaaattt taatgcaaat acatacattc
2161 ctgaaagacg gggaattaaa ttactaattt tttttttttt taaatgatga cagtggtccc
2221 agaacttgga aaagttgtag ggatttctaa actcaagcag attcgcaagt gctgtgcgct
2281 tgtcagacca tcagaccagg gccaaccaat cagaaggcaa cttactgtat aaattatgca
2341 gagttatttt cctatatctc acagtattaa aaaaaaaaaa aaaaaaaaaa aaaa
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