LOCUS BC009846 1747 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hippocalcin-like 1, mRNA (cDNA clone MGC:15294
IMAGE:4100091), complete cds.
ACCESSION BC009846
VERSION BC009846.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1747)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1747)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009846.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19913440.
FEATURES Location/Qualifiers
source 1..1747
/db_xref="H-InvDB:HIT000034613"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15294 IMAGE:4100091"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1747
/gene="HPCAL1"
/gene_synonym="BDR1"
/gene_synonym="HLP2"
/gene_synonym="VILIP-3"
/db_xref="GeneID:3241"
/db_xref="HGNC:HGNC:5145"
/db_xref="MIM:600207"
CDS 360..941
/gene="HPCAL1"
/gene_synonym="BDR1"
/gene_synonym="HLP2"
/gene_synonym="VILIP-3"
/codon_start=1
/product="hippocalcin-like 1"
/protein_id="AAH09846.1"
/db_xref="GeneID:3241"
/db_xref="HGNC:HGNC:5145"
/db_xref="MIM:600207"
/translation="MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLT
VDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLK
WAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNN
DGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQF"
BASE COUNT 325 a 550 c 520 g 352 t
ORIGIN
1 gcggacgggc ggactgacgg gcgcctccac cttgctccct ccctggctgc cggcttcctt
61 ttgtctttct gggcggcgat gagcgcaggg ccggcgcagc agctgcgggc gcacggaggc
121 ccgcgctgct agtcactcct cccggcctcg gcgcgcttgt cccgggcagc ggcccgggcc
181 cgctgcagcc gccgccggcg ccgaacttgg gctcgggaag ccggcggacc gcgtcctgcg
241 ccggagcagg ggcatggtct agtggcccag tcaggacgcg gaaacactcc ctggaggttc
301 tgacccgctc cctctcagcc tccgcctggt ctctggtgta gtcgccgccg ccagccgcca
361 tgggcaaaca gaacagcaag ctgcggcccg aggtgctgca ggacctgcgg gagaacacgg
421 agttcaccga ccacgagctg caggagtggt acaagggctt cctcaaggac tgccccaccg
481 gccacctgac cgtggacgag ttcaagaaga tctacgccaa cttcttcccc tacggcgacg
541 cttccaagtt cgccgagcac gtcttccgca ccttcgacac caacggcgac ggcaccatcg
601 acttccggga gttcatcatt gcgctgagcg tgacctcgcg gggcaagctg gagcagaagc
661 tcaagtgggc cttcagcatg tacgacctgg acggcaacgg ctacatcagc cgcagcgaga
721 tgctggagat cgtgcaggcc atctacaaga tggtgtcgtc tgtgatgaag atgccggagg
781 atgagtccac cccggagaag cgcacagaca agatcttcag gcagatggac accaacaatg
841 acggcaaact gtccttggaa gaattcatca gaggtgccaa gagcgacccc tccatcgtcc
901 gcctgctgca gtgcgacccc agcagtgcca gtcagttctg agcgagcggc ccctggacag
961 ttgcagagaa acacaggctt gtcgtgccgt ttaagctttg cttgcaagag tggatgcccc
1021 gcaatcgttc ctgctctccc gggccccggg cctggggcat gcgttgcacc tgcccggccc
1081 ggtggctgcg cctccctcct ccacctgacc aacgcgacat tcctcccctc acgcctggcc
1141 cggtcccttc cagggcaact cccagggatg tggtgacatg cagggttcaa gtgttcttgg
1201 ttccaggcac ctcccggctc acggggagct cagaggtcca tgccgaggag accaggcagg
1261 acctcccgag gctgcgcccc ggccggccca tgcgttttgt gatcccaagt gactctgtgg
1321 gaagggtggg gacgaggcgt cgggagggta tacagggagc ccctcccgtg catggctgcc
1381 cccccgttca ttttctccac cacagccgct tgcacgtata gatactgtgg tcccctttct
1441 tttaatatat aaattatgta tggtgaagtg gagtgtattg tgtaggtccc gtatttaatg
1501 cctctgactg cctttgaagc gcagccctct gtggcccgca gccccctgag cctggctgtt
1561 gtgtggtatt tatgctctct ttgtctgcct gtttctaagg aaatgcatgt gtgccctgag
1621 ccgtgatgat cctcccatcc gtgttgtgag cacaggcatt tgtgtctggt ctgtcctccc
1681 tgttgattgg tctggcattt ccggtattaa aatgataaaa taaatggcaa aaaaaaaaaa
1741 aaaaaaa
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