LOCUS BC009828 1643 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens LAG1 homolog, ceramide synthase 4, mRNA (cDNA clone
MGC:15046 IMAGE:3936998), complete cds.
ACCESSION BC009828
VERSION BC009828.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1643)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1643)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC009828.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: d Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13375716.
FEATURES Location/Qualifiers
source 1..1643
/db_xref="H-InvDB:HIT000034600"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15046 IMAGE:3936998"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1643
/gene="LASS4"
/gene_synonym="CerS4"
/gene_synonym="Trh1"
/db_xref="GeneID:79603"
/db_xref="HGNC:HGNC:23747"
CDS 124..1308
/gene="LASS4"
/gene_synonym="CerS4"
/gene_synonym="Trh1"
/codon_start=1
/product="LAG1 homolog, ceramide synthase 4"
/protein_id="AAH09828.1"
/db_xref="GeneID:79603"
/db_xref="HGNC:HGNC:23747"
/translation="MLSSFNEWFWQDRFWLPPNVTWTELEDRDGRVYPHPQDLLAALP
LALVLLAMRLAFERFIGLPLSRWLGVRDQTRRQVKPNATLEKHFLTEGHRPKEPQLSL
LAAQCGLTLQQTQRWFRRRRNQDRPQLTKKFCEASWRFLFYLSSFVGGLSVLYHESWL
WAPVMCWDRYPNQTLKPSLYWWYLLELGFYLSLLIRLPFDVKRKDFKEQVIHHFVAVI
LMTFSYSANLLRIGSLVLLLHDSSDYLLEACKMVNYMQYQQVCDALFLIFSFVFFYTR
LVLFPTQILYTTYYESISNRGPFFGYYFFNGLLMLLQLLHVFWSCLILRMLYSFMKKG
QMEKDIRSDVEESDSSEEVAAAQEPLQLKNGAAGGPRPAPTDGPQSRVAGRLTNRHTT
AT"
BASE COUNT 337 a 491 c 466 g 349 t
ORIGIN
1 gggggactga ttagaagcct cattcagtgc acctgggccc cagcaggccc agccaggcgt
61 ggaggaagag gcattgagga ctttccttac ctgtttttcc agctcaccca ctgccagcag
121 agaatgctgt ccagtttcaa cgagtggttt tggcaggaca ggttctggtt accacccaat
181 gtcacgtgga cagagctaga agaccgggat ggccgtgtct acccccaccc ccaggacttg
241 ttggcagccc tgcccctggc gctggtcctc ctggccatgc gccttgcctt tgagagattc
301 attggcctgc ccctgagccg gtggctgggt gtgagggatc agaccaggag gcaagtgaag
361 cccaacgcca cgctggagaa acacttcctc acggaagggc acaggcccaa ggagccccag
421 ctgtctctcc tggccgccca gtgtggcctc acgctgcagc agacccagcg atggttccgg
481 agacgccgga accaggatcg accccagctg accaagaagt tctgtgaggc cagctggagg
541 tttctcttct acctgtcctc cttcgtgggc ggcctctcgg tcctgtacca cgagtcatgg
601 ctgtgggcac cagtaatgtg ctgggacagg tacccaaacc agactctgaa gccatccctg
661 tactggtggt acctcttgga gctgggtttc tacctctcac tgctaatcag gctgcccttt
721 gatgtcaagc gcaaggattt caaggagcag gtgatacacc acttcgtggc ggtcatcctg
781 atgaccttct cctacagtgc caacctgctg cgcattggct ctctggtgct gctgttacat
841 gattcctctg actacctgct ggaggcctgt aagatggtca actacatgca gtatcagcaa
901 gtgtgcgacg ctctcttcct catcttctcc tttgtcttct tctacacccg actggtcctc
961 tttcccaccc agatcctcta caccacatac tacgagtcca tcagcaacag gggccccttc
1021 ttcggctact acttcttcaa cgggcttctg atgttgctgc agctgctgca cgtgttctgg
1081 tcttgcctca ttctgcgcat gctctatagc ttcatgaaga agggccagat ggagaaggac
1141 attcgtagtg atgtagaaga atcagactcc agtgaggagg tggcggcggc ccaggaacct
1201 ctgcagctaa agaacggggc agctggaggg cccaggccag cccccactga tggccctcag
1261 agccgggtgg ccgggcgtct gaccaacagg cacacaacag ccacatagcc gggtggggct
1321 ggctgtaagg ggttgccccc ccgccagtgc cttggatatt tctggggtga ctggactggc
1381 gcccctgggc cacctttctg gagacaggga gggccccacc cggggtgggt gggaaggctg
1441 atgatctgtc tccagcccct tccttctgcc cacccgccct tcttccctct gggcaactgg
1501 acagatctgg gagccagcag ctggatgctg tggctggcca gagacacctc caggctgtag
1561 cctgggggct ggggggagcc ccaggctgaa aagggtccaa ttaaaacaaa tggagccaaa
1621 aaaaaaaaaa aaaaaaaaaa aaa
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