LOCUS BC009747 1588 bp mRNA linear HUM 18-JAN-2007
DEFINITION Homo sapiens vacuolar protein sorting 26 homolog B (S. pombe), mRNA
(cDNA clone MGC:10485 IMAGE:3938319), complete cds.
ACCESSION BC009747
VERSION BC009747.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1588)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1588)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC009747.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: l Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147470.
FEATURES Location/Qualifiers
source 1..1588
/db_xref="H-InvDB:HIT000034547"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10485 IMAGE:3938319"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1588
/gene="VPS26B"
/gene_synonym="Pep8b"
/db_xref="GeneID:112936"
/db_xref="HGNC:HGNC:28119"
/db_xref="MIM:610027"
CDS 435..1445
/gene="VPS26B"
/gene_synonym="Pep8b"
/codon_start=1
/product="vacuolar protein sorting 26 homolog B (S.
pombe)"
/protein_id="AAH09747.1"
/db_xref="GeneID:112936"
/db_xref="HGNC:HGNC:28119"
/db_xref="MIM:610027"
/translation="MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGE
TVSGKVSLALKNPNKRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQS
QAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNS
SIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG
PNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVL
IDEEERRYFKQQEVVLWRKGDIVRKSMSHQAAIASQRFEGTTSLGEVRTPSQLSDNNC
RQ"
BASE COUNT 356 a 489 c 480 g 263 t
ORIGIN
1 cggtgcgttg caccgccgga ggctgggcag ctcgcagcgc tgctcggcgc tggaccccac
61 ccggcaggcg caggccaccc acacccggct ctgtgcggct gccccccgca gcattgcacg
121 gccgaccctc gcccgcccac tgccaccggc cgcgggactg gctgggactg gctcggccga
181 gggcactgct cctcggtgca ttgctgctcg ggcgccgcag cccgcagccg ccagcctccc
241 ccggccgtgc ccctcccccg tggagccggc tgtccgtcgg cgcccactgc ccggcggcag
301 cggcggagcc aggcagcccc gcggcggccg agcgcgctcg cgcatcgggc cctctggcct
361 tctttaccta gggcagcccg cgccccggtg cgagggagcg gtccttaccg agacccgccc
421 ggcccggcgg tgcgatgagc ttcttcggct tcgggcagag cgtggaggtg gaaatccttc
481 tgaacgatgc agagagtagg aagcgggccg agcacaagac ggaggacggg aagaaggaga
541 aatatttcct cttctacgac ggggagacgg tctccgggaa ggtgagcctt gccctcaaga
601 accccaacaa gcggctggag caccagggca tcaagatcga gttcatcggg cagatcgaac
661 tctactacga tcgcgggaac caccatgagt ttgtgtccct ggtgaaggac ctggcccggc
721 ctggagagat cacccagtcg caggccttcg actttgagtt tacccacgtg gagaagccgt
781 atgagtccta cacagggcag aatgtgaagc tacgctattt ccttcgtgct accatcagcc
841 gccgcctcaa tgatgttgtc aaagagatgg acattgtagt tcacacactc agcacatacc
901 cagagctgaa ctcttccatc aagatggagg ttgggattga ggactgtctg cacattgaat
961 ttgagtacaa taaatccaaa taccacttga aagatgtcat tgtagggaag atatacttcc
1021 tgctggtgag aatcaaaatc aagcacatgg agatagacat catcaagcga gaaacgacgg
1081 gtacaggccc caacgtgtac catgagaatg acacgatagc caagtacgag atcatggacg
1141 gggcaccagt gcgaggagag tccatcccga tccggctctt cctggccggg tatgagctca
1201 cgcccaccat gcgggacatc aacaagaagt tctctgtgcg ctattacctc aacctggtgc
1261 tgatagacga ggaggagcgg cgctacttca agcagcagga agtggtgttg tggcggaagg
1321 gtgacatcgt acggaagagc atgtcccacc aggcggccat cgcctcacag cgctttgagg
1381 gcaccacctc cctgggtgag gtgcggaccc ccagccagct gtctgacaac aactgcaggc
1441 agtaggcccc cagggccgag aagatgctgg gcacccaccc agcatcccca tctaccaaca
1501 ccagcggctg ggggcggggg cggaccttgt gaggctcagt tgacccgtta cttgcaacct
1561 gaaaacaaaa aaaaaaaaaa aaaaaaaa
//