LOCUS BC009698 402 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein C-I, mRNA (cDNA clone MGC:9245
IMAGE:3889900), complete cds.
ACCESSION BC009698
VERSION BC009698.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 402)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 402)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC009698.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: d Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51944963.
FEATURES Location/Qualifiers
source 1..402
/db_xref="H-InvDB:HIT000034513"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9245 IMAGE:3889900"
/tissue_type="Lung, carcinoma, large cell
undifferentiated."
/clone_lib="NIH_MGC_69"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..402
/gene="APOC1"
/db_xref="GeneID:341"
/db_xref="HGNC:HGNC:607"
/db_xref="MIM:107710"
CDS 23..274
/gene="APOC1"
/codon_start=1
/product="apolipoprotein C-I"
/protein_id="AAH09698.1"
/db_xref="GeneID:341"
/db_xref="HGNC:HGNC:607"
/db_xref="MIM:107710"
/translation="MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTL
EDKARELISRIKQSELSAKMREWFSETFQKVKEKLKIDS"
BASE COUNT 108 a 111 c 107 g 76 t
ORIGIN
1 agagtgcccc tccggcctcg ccatgaggct cttcctgtcg ctcccggtcc tggtggtggt
61 tctgtcgatc gtcttggaag gcccagcccc agcccagggg accccagacg tctccagtgc
121 cttggataag ctgaaggagt ttggaaacac actggaggac aaggctcggg aactcatcag
181 ccgcatcaaa cagagtgaac tttctgccaa gatgcgggag tggttttcag agacatttca
241 gaaagtgaag gagaaactca agattgactc atgaggacct gaagggtgac atcccaggag
301 gggcctctga aatttcccac accccagcgc ctgtgctgag gactccctcc atgtggcccc
361 aggtgccacc aataaaaatc ctacagaaaa aaaaaaaaaa aa
//