LOCUS BC009613 1425 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 39, mRNA (cDNA clone
MGC:14816 IMAGE:4245944), complete cds.
ACCESSION BC009613
VERSION BC009613.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1425)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1425)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: k Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21389430.
FEATURES Location/Qualifiers
source 1..1425
/db_xref="H-InvDB:HIT000034473"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14816 IMAGE:4245944"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1425
/gene="LRRC39"
/gene_synonym="MGC14816"
/db_xref="GeneID:127495"
/db_xref="HGNC:HGNC:28228"
CDS 200..1207
/gene="LRRC39"
/gene_synonym="MGC14816"
/codon_start=1
/product="leucine rich repeat containing 39"
/protein_id="AAH09613.1"
/db_xref="GeneID:127495"
/db_xref="HGNC:HGNC:28228"
/translation="MTENVVCTGAVNAVKEVWEKRIKKLNEDLKREKEFQHKLVRIWE
ERVSLTKLREKVTREDGRVILKIEKEEWKTLPSSLLKLNQLQEWQLHRTGLLKIPEFI
GRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNKIKTVPKELSNCASLEKLELA
VNRDICDLPQELSNLLKLTHLDLSMNDFTTIPLAVLNMPALEWLDMGSNKLEQLPDTI
ERMQNLHTLWLQRNEITCLPQTISNMKNLGTLVLSNNKLQDIPVCMEEMANLRFVNFR
DNPLKLKVSLPPSEGTDEEEERELFGLQFMHTYIQESRRRADHQVNGSTTLPISINTD
G"
BASE COUNT 520 a 252 c 270 g 383 t
ORIGIN
1 atcatttgga gccacactga aaaaaaaatt tccccctgca atctactctt aactgatagt
61 cgctaacttt ggttatgtgt gtctattcag aatattacat taattgattt ctcaaacaaa
121 ggtcctttct gaaatggtat ctatgattca gctattcaaa acctaatgaa gttggtgact
181 atgacaatgt ggagaaatca tgacagaaaa tgtggtttgt actggggctg tcaatgctgt
241 aaaggaagtt tgggaaaaaa gaataaagaa actcaatgaa gacctgaagc gagagaagga
301 atttcaacac aagctagtgc ggatctggga agaacgagta agcttaacca agctaagaga
361 aaaggtcacc agggaagatg gaagagtcat tttgaagata gaaaaagagg aatggaagac
421 cctcccttct tctctgctga aactgaatca actacaggaa tggcaacttc atagaactgg
481 tttgctgaaa attcctgaat tcattggaag attccagaac ctcattgtgt tagatttatc
541 tcgaaacaca atttcagaga taccaccagg gattggactg cttactagac ttcaggaact
601 gattctcagc tacaacaaaa tcaagactgt ccccaaggaa ctaagtaatt gtgccagctt
661 ggagaaacta gaactggctg ttaacagaga tatatgtgat cttccacaag agctcagcaa
721 tctgctaaaa cttactcacc ttgatctgag tatgaacgat tttactacaa tccctcttgc
781 tgtgttgaac atgcctgccc ttgagtggct ggacatggga agcaacaaac ttgaacaact
841 tcctgatact atagaaagaa tgcaaaatct acatacgtta tggctgcaac gaaatgaaat
901 aacatgcttg cctcaaacaa tcagcaatat gaaaaatctg ggtactcttg ttctcagcaa
961 caataaactg caagatattc cagtatgcat ggaagaaatg gcaaatctga ggtttgtcaa
1021 cttcagagac aacccactga aattgaaagt atcacttcct cccagtgaag gcacagatga
1081 agaagaggaa cgggaattat ttggccttca gtttatgcac acatacatac aagagtcacg
1141 gagaagagca gatcaccaag tcaacggttc aactacttta ccaatctcca taaatacgga
1201 tggataatat aattcaagat gcccttctaa agaggattac tttggtgaat tctctaatgt
1261 ttggatttct gaagtaaaaa gaaaagctat taccaaagtt taatgaggcc acagcatttt
1321 ttaaagttca tattatttgc tatttaaagt atatattttt ttgatataaa aatataatta
1381 aaaaattttt ttggtcaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//