LOCUS BC009501 2068 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans),
mRNA (cDNA clone MGC:16536 IMAGE:4040230), complete cds.
ACCESSION BC009501
VERSION BC009501.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2068)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2068)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009501.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: n Column: 8.
FEATURES Location/Qualifiers
source 1..2068
/db_xref="H-InvDB:HIT000034408"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16536 IMAGE:4040230"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2068
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
CDS 191..934
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/codon_start=1
/product="anterior pharynx defective 1 homolog A (C.
elegans)"
/protein_id="AAH09501.1"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
/translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV
SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA
SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS
AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY
AVTVSMGLWAFITAGGSLRSIQRSLLCKD"
BASE COUNT 358 a 577 c 556 g 577 t
ORIGIN
1 gaggaagtgg cgcggacctt catttggggt ttcggttccc ccccttcccc ttccccgggg
61 tctgggggtg acattgcacc gcgcccctcg tggggtcgcg ttgccacccc acgcggactc
121 cccagctggc gcgcccctcc catttgcctg tcctggtcag gcccccaccc cccttcccac
181 ctgaccagcc atgggggctg cggtgttttt cggctgcact ttcgtcgcgt tcggcccggc
241 cttcgcgctt ttcttgatca ctgtggctgg ggacccgctt cgcgttatca tcctggtcgc
301 aggggcattt ttctggctgg tctccctgct cctggcctct gtggtctggt tcatcttggt
361 ccatgtgacc gaccggtcag atgcccggct ccagtacggc ctcctgattt ttggtgctgc
421 tgtctctgtc cttctacagg aggtgttccg ctttgcctac tacaagctgc ttaagaaggc
481 agatgagggg ttagcatcgc tgagtgagga cggaagatca cccatctcca tccgccagat
541 ggcctatgtt tctggtctct ccttcggtat catcagtggt gtcttctctg ttatcaatat
601 tttggctgat gcacttgggc caggtgtggt tgggatccat ggagactcac cctattactt
661 cctgacttca gcctttctga cagcagccat tatcctgctc catacctttt ggggagttgt
721 gttctttgat gcctgtgaga ggagacggta ctgggctttg ggcctggtgg ttgggagtca
781 cctactgaca tcgggactga cattcctgaa cccctggtat gaggccagcc tgctgcccat
841 ctatgcagtc actgtttcca tggggctctg ggccttcatc acagctggag ggtccctccg
901 aagtattcag cgcagcctct tgtgtaagga ctgactacct ggactgatcg cctgacagat
961 cccacctgcc tgtccactgc ccatgactga gcccagcccc agcccgggtc cattgcccac
1021 attctctgtc tccttctcgt cggtctaccc cactacctcc agggttttgc tttgtccttt
1081 tgtgaccgtt agtctctaag ctttaccagg agcagcctgg gttcagccag tcagtgactg
1141 gtgggtttga atctgcactt atccccacca cctggggacc cccttgttgt gtccaggact
1201 ccccctgtgt cagtgctctg ctctcaccct gcccaagact cacctccctt cccctctgca
1261 ggccgacggc aggaggacag tcgggtgatg gtgtattctg ccctgcgcat cccacccgag
1321 gactgaggga acctaggggg gacccctggg cctggggtgc cctcctgatg tcctcgccct
1381 gtatttctcc atctccagtt ctggacagtg caggttgcca agaaaaggga cctagtttag
1441 ccattgccct ggagatgaaa ttaatggagg ctcaaggata gatgagctct gagtttctca
1501 gtactccctc aagactggac atcttggtct ttttctcagg cctgaggggg aaccattttt
1561 ggtgtgataa ataccctaaa ctgccttttt ttcttttttg aggtgggggg agggaggagg
1621 tatattggaa ctcttctaac ctccttgggc tatattttct ctcctcgagt tgctcctcat
1681 ggctgggctc atttcggtcc ctttctcctt ggtcccagac cttgggggaa aggaaggaag
1741 tgcatgtttg ggaactggca ttactggaac taatggtttt aacctcctta accaccagca
1801 tccctcctct ccccaaggtg aagtggaggg tgctgtggtg agctggccac tccagagctg
1861 cagtgccact ggaggagtca gactaccatg acatcgtagg gaaggagggg agattttttt
1921 gtagttttta attggggtgt gggaggggcg gggaggtttt ctataaactg tatcattttc
1981 tgctgagggt ggagtgtccc atccttttaa tcaaggtgat tgtgattttg actaataaaa
2041 aagaatttgt aaaaaaaaaa aaaaaaaa
//