LOCUS BC009387 2788 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens solute carrier family 18 (vesicular monoamine), member
1, mRNA (cDNA clone MGC:15281 IMAGE:4127678), complete cds.
ACCESSION BC009387
VERSION BC009387.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2788)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2788)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009387.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: h Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4506986
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2788
/db_xref="H-InvDB:HIT000034326"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15281 IMAGE:4127678"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2788
/gene="SLC18A1"
/gene_synonym="CGAT"
/db_xref="GeneID:6570"
/db_xref="HGNC:HGNC:10934"
/db_xref="MIM:193002"
CDS 187..1344
/gene="SLC18A1"
/gene_synonym="CGAT"
/codon_start=1
/product="SLC18A1 protein"
/protein_id="AAH09387.1"
/db_xref="GeneID:6570"
/db_xref="HGNC:HGNC:10934"
/db_xref="MIM:193002"
/translation="MLRTILDAPQRLLKEGRASRQLVLVVVFVALLLDNMLFTVVVPI
VPTFLYDMEFKEVNSSLHLGHAGSSPHALASPAFSTIFSFFNNNTVAVEESVPSGIAW
MNDTASTIPPPATEAISAHKNNCLQGTGFLEEEITRVGVLFASKAVMQLLVNPFVGPL
TNRIGYHIPMFAGFVIMFLSTVMFAFSGTYTLLFVARTLQGIGSSFSSVAGLGMLASV
YTDDHERGRAMGTALGGLALGLLVGAPFGSVMYEFVGKSAPFLILAFLALLDGALQLC
ILQPSKVSPESAKGTPLFMLLKDPYILVAAGSICFANMGVAILEPTLPIWMMQTMCSP
KWQLGLAFLPASVSYLIGTNLFGVLANKMGRWLCSLIGMLVVGTSLLCLPS"
BASE COUNT 607 a 725 c 666 g 790 t
ORIGIN
1 ctgctgtctt gctaacagct gccaatacct cactgagtgc ctcacaccaa catgggctcc
61 aagtgagttt ccttcgtctg ggcagactcc ctcccctctt ccataaaggc tgcaggagac
121 ctgtagctgt cacaggacct tccctaagag cccgcagggg aagactgccc cagtccggcc
181 atcaccatgc tccggaccat tctggatgct ccccagcggt tgctgaagga ggggagagcg
241 tcccggcagc tggtgctggt ggtggtattc gtcgctttgc tcctggacaa catgctgttt
301 actgtggtgg tgccaattgt gcccaccttc ctatatgaca tggagttcaa agaagtcaac
361 tcttctctgc acctcggcca tgccggaagt tccccacatg ccctcgcctc tcctgccttt
421 tccaccatct tctccttctt caacaacaac accgtggctg ttgaagaaag cgtacctagt
481 ggaatagcat ggatgaatga cactgccagc accatcccac ctccagccac tgaagccatc
541 tcagctcata aaaacaactg cttgcaaggc acaggtttct tggaggaaga gattacccgg
601 gtcggggttc tgtttgcttc aaaggctgtg atgcaacttc tggtcaaccc attcgtgggc
661 cctctcacca acaggattgg atatcatatc cccatgtttg ctggctttgt tatcatgttt
721 ctctccacag ttatgtttgc tttttctggg acctatactc tactctttgt ggcccgaacc
781 cttcaaggca ttggatcttc attttcatct gttgcaggtc ttggaatgct ggccagtgtc
841 tacactgatg accatgagag aggacgagcc atgggaactg ctctgggggg cctggccttg
901 gggttgctgg tgggagctcc ctttggaagt gtaatgtacg agtttgttgg gaagtctgca
961 cccttcctca tcctggcctt cctggcacta ctggatggag cactccagct ttgcatccta
1021 cagccttcca aagtctctcc tgagagtgcc aaggggactc ccctctttat gcttctcaaa
1081 gacccttaca tcctggtggc tgcagggtcc atctgctttg ccaacatggg ggtggccatc
1141 ctggagccca cactgcccat ctggatgatg cagaccatgt gctcccccaa gtggcagctg
1201 ggtctagctt tcttgcctgc cagtgtgtcc tacctcattg gcaccaacct ctttggtgtg
1261 ttggccaaca agatgggtcg gtggctgtgt tccctaatcg ggatgctggt agtaggtacc
1321 agcttgctct gtctaccaag ttagaagtct aaatgaaacc tttcagtgat gtccataatg
1381 gaaaacagag gcaactttat tccatgaaga atgagaccag gagtgtatgt ttaggttcct
1441 ctggctcaca atatttttgg tctcattggc cccaatgcag ggcttggcct tgccataggc
1501 atggtggatt cttctatgat gcccatcatg gggcacctgg tggatctacg ccacacctcg
1561 gtgtatggga gtgtctacgc catcgctgat gtggcttttt gcatgggctt tgctataggt
1621 ccatccaccg gtggtgccat tgtaaaggcc atcggttttc cctggctcat ggtcatcact
1681 ggggtcatca acatcgtcta tgctccactc tgctactacc tgcggagccc cccggcaaag
1741 gaagagaagc ttgctattct gagtcaggac tgccccatgg agacccggat gtatgcaacc
1801 cagaagccca cgaaggaatt tcctctgggg gaggacagtg atgaggagcc tgaccatgag
1861 gagtagcagc agaaggtgct ccttgaattc atgatgcctc agtgaccacc tctttccctg
1921 ggaccagatc accatggctg agcccacggc tcagtgggct tcacatacct ctgcctggga
1981 atcttctttc ctcccctccc atggacactg tccctgatac tcttctcacc tgtgtaactt
2041 gtagctcttc ctctatgcct tggtgccgca gtggcccatc ttttatggga agacagagtg
2101 atgcaccttc ccgctgctgt gaggttgatt aaacttgagc tgtgacgggt tctgcaaggg
2161 gtgactcatt gcatagaggt ggtagtgagt aatgtgcccc tgaaaccagt ggggtgactg
2221 acaagcctct ttaatctgtt gcctgatttt ctctggcata gtcccaacag atcggaagag
2281 tgttaccctc ttttcctcaa cgtgttcttt cccgggtttt cccagccgag ttgagaaaat
2341 gttctcagca ttgtcttgct gccaaatgcc agcttgaaga gttttgtttt gttttttttc
2401 catttatttt ttttttttaa taaagtgagt gatttttctg tggctaaatc tagagctgct
2461 aaaagggctt taccctcagt gaaaagtgtc ttctattttc attatctttc agaaacagga
2521 gcccatttct cttctgctgg agttattgac attctcctga cctcccctgt gtgttcctac
2581 cttttctgaa cctcttagac tcttagaaat aaaagtagaa gaaagacaga aaaaataact
2641 gattagaccc aagatttcat gggaagaagt taaaagaaac tgccttgaaa tccctcctga
2701 ttgtagattt cctaatagga ggggtgtaat gtgacattgt tcatacttgc taataaatac
2761 attattgcct aaaaaaaaaa aaaaaaaa
//