LOCUS BC009368 3326 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 1, mRNA (cDNA clone
MGC:15280 IMAGE:4110499), complete cds.
ACCESSION BC009368
VERSION BC009368.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3326)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3326)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009368.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: b Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21264349.
FEATURES Location/Qualifiers
source 1..3326
/db_xref="H-InvDB:HIT000034314"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15280 IMAGE:4110499"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3326
/gene="SMARCD1"
/gene_synonym="BAF60A"
/gene_synonym="CRACD1"
/gene_synonym="Rsc6p"
/db_xref="GeneID:6602"
/db_xref="HGNC:HGNC:11106"
/db_xref="MIM:601735"
CDS 238..1668
/gene="SMARCD1"
/gene_synonym="BAF60A"
/gene_synonym="CRACD1"
/gene_synonym="Rsc6p"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
/protein_id="AAH09368.3"
/db_xref="GeneID:6602"
/db_xref="HGNC:HGNC:11106"
/db_xref="MIM:601735"
/translation="MGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG
NPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELV
PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED
GEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVE
WHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVI
IQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIII
NHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETI
NQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQE
AVCRYFYSKVQQRRQELEQALGIRNT"
BASE COUNT 744 a 952 c 841 g 789 t
ORIGIN
1 ctgagcctcc cgtgccggcc ggccggccgg gggaacaggc gggcgctcgg ggggcgctcg
61 gggggcgggg ggagttccgg ttccggttct ttgtgcggct gcatcggcgg ctccgggaag
121 atggcggccc gggcgggttt ccagtctgtg gctccaagcg gcggcgccgg agcctcagga
181 ggggcgggcg cggctgctgc cttgggcccg ggcggaactc cggggcctcc tgtgcgaatg
241 ggcccggctc cgggtcaagg gctgtaccgc tccccgatgc ccggagcggc ctatccgaga
301 ccaggtatgt tgccaggcag ccgaatgaca cctcagggac cttccatggg accccctggc
361 tatgggggga acccttcagt ccgacctggc ctggcccagt cagggatgga tcagtcccgc
421 aagagacctg cccctcagca gatccagcag gtccagcagc aggcggtcca aaatcgaaac
481 cacaatgcaa agaaaaagaa gatggctgac aaaattctac ctcaaaggat tcgtgaactg
541 gtaccagaat cccaggccta tatggatctc ttggcttttg aaaggaaact ggaccagact
601 atcatgagga aacggctaga tatccaagag gccttgaaac gtcccatcaa gcaaaaacgg
661 aagctgcgaa ttttcatttc taacactttc aatccggcta agtcagatgc cgaggatggg
721 gaagggacgg tggcttcctg ggagcttcgg gtagaaggac ggctcctgga ggattcagcc
781 ttgtccaaat atgatgccac taaacaaaag aggaagttct cttccttttt taagtccttg
841 gtgattgaac tggacaaaga cctgtatggg ccagacaacc atctggtaga atggcacagg
901 accgccacta cccaggagac cgatggcttt caggtgaagc ggccgggaga cgtgaatgta
961 cggtgtactg tcctactgat gctggattac cagcctcccc agtttaaatt agacccccgc
1021 ctagctcgac tcctgggcat ccatacccag actcgtccag tgatcatcca agcactgtgg
1081 caatatatta agacacataa gctccaggac cctcacgagc gggagtttgt catctgtgac
1141 aagtacctgc agcagatctt tgagtctcaa cgtatgaagt tttcagagat ccctcagcgg
1201 ctccatgcct tgcttatgcc accagaacct atcatcatta atcatgtcat cagtgttgac
1261 ccgaatgatc agaaaaagac agcttgttat gacattgatg ttgaagtgga tgacaccttg
1321 aagacccaga tgaattcttt tctgctgtcc actgccagcc aacaggagat tgctactcta
1381 gacaacaaga tccatgagac aatagaaacc atcaaccagc tgaagactca gcgggagttc
1441 atgctgagct ttgccagaga ccctcagggt ttcatcaatg actggcttca gtcccagtgc
1501 agggacctca agacaatgac tgatgtggtg ggtaacccag aggaggagcg ccgagctgag
1561 ttctacttcc agccctgggc tcaggaggct gtgtgccgat acttctactc caaggtgcag
1621 cagagacgac aagaattaga gcaagccctg ggaatccgga atacataggg cctctcccac
1681 agccctgatt cgactgcacc aattcttgat ttgggccctg tgctgcctgc ctcatagtat
1741 ctgccttggt cttgcttggg gcgttccagg ggatgctgtt ggttcaagga caacaccaga
1801 atgaagaggg tctcacaaga cacctgttat cctcttcttt caccctatct cttcccaccc
1861 ccagcttccc tttgccccac aaagttccca tgtgcctgta ccctcccctg gtctacatag
1921 gacctctaga tagtgttaga gagagaacat gtagtggtaa tgagtgcttg gaatggattg
1981 ggcctcaggc caggtggtct tcaaggggac cagctaactg atcctgccct tcagagaccc
2041 aggagttggg agctttcgct ccttctccaa gactcaggcc tgtgggcact ctataagcta
2101 gttgatcttg gctctcctga taacagaatc caatttcctt ccttccctcc acaggtttgg
2161 aacaaactct cccttcactt gttgccctgt agcactacag aaaccctggt tcttgggctc
2221 cactgagccc caggtcagtc cccagccctc tgggttggcc tgctgtcagt gcttctctca
2281 ctccttagtt ggggtccaca tcagtattgg agttttgttc tttattgctc cctcccagac
2341 actccctgtg gctgcccttt gtgattccct cagatctgcc ctaatcccgg gcatttgggt
2401 gggggaatct tgcctttccc tttcagagcc ccagggatct catctgggga actgtcattg
2461 ccagcagagg ctgttccttc ctgctgtttg gagatgtgac tcattcattc actcactcca
2521 ccctgcctct gcatccctta atggagaaac gggcctaaaa ccaaacgggt aaaaagccct
2581 gggccatccc tgtcttcctg tcccttgtct gcccagttga cacctactgg tgacttctag
2641 ggcactgagg agtgaaagcg cctagggctg gagaatagcg ctgagttggg tttgtgactc
2701 ttccctctcc ctgcctcaca ggattgtgac tccccagccc ctgccctcaa agcttcagac
2761 ccctcaggta gcagcaggac cttgtgatct tggccccttg gatctgagat ggtttttgca
2821 tctttccagg agagcctcac attcttcttc caggttgtat cacccccgag ttagcatatc
2881 ccaggctcgc agactcaaca cagcaagggt gggagacagc tgggcacaaa gggggaattc
2941 cgttcagcat gggctctaaa cccacagaac tgacaaagcc cctgcttccc caccccctcc
3001 tcaggctcct gcgagcacac ccccaccccc aaatccctcc ctgttctaca ctggggacag
3061 cagaattttc tccccgtctt ccccttcctg ccattttccc tcccttgaaa ggttgacact
3121 ggacaacctt ggggcagctg agccctggcc gcctcctggc tggaaccatg agaaggaagc
3181 tcagtacttc ccacagtgtc cctgttgata actgttttta ttaactgaat tgtttttttc
3241 atggaccaaa cttttttttg tactgtcccc ttattgatgt tacccagttt taataaaaga
3301 atcttctgaa aaaaaaaaaa aaaaaa
//