LOCUS BC009348 2193 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cirrhosis, autosomal recessive 1A (cirhin), mRNA (cDNA
clone MGC:16757 IMAGE:4131625), complete cds.
ACCESSION BC009348
VERSION BC009348.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2193)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2193)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC009348.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: k Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14249535.
FEATURES Location/Qualifiers
source 1..2193
/db_xref="H-InvDB:HIT000034297"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16757 IMAGE:4131625"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2193
/gene="CIRH1A"
/gene_synonym="CIRHIN"
/gene_synonym="FLJ14728"
/gene_synonym="KIAA1988"
/gene_synonym="NAIC"
/gene_synonym="TEX292"
/db_xref="GeneID:84916"
/db_xref="HGNC:HGNC:1983"
/db_xref="MIM:607456"
CDS 29..2089
/gene="CIRH1A"
/gene_synonym="CIRHIN"
/gene_synonym="FLJ14728"
/gene_synonym="KIAA1988"
/gene_synonym="NAIC"
/gene_synonym="TEX292"
/codon_start=1
/product="cirrhosis, autosomal recessive 1A (cirhin)"
/protein_id="AAH09348.1"
/db_xref="GeneID:84916"
/db_xref="HGNC:HGNC:1983"
/db_xref="MIM:607456"
/translation="MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYN
LSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGG
PIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHI
AAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKV
QFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQ
WVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPH
RCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPEN
IICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDST
KLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGV
HVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRT
VQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPF
PPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKK
KFGT"
BASE COUNT 587 a 528 c 494 g 584 t
ORIGIN
1 ccgggaaggg gagcgtgggg ccgctggaat gggtgaattt aaggtccatc gagtacgttt
61 ctttaattat gttccatcag gaatccgctg tgtggcttac aataaccagt caaacagatt
121 ggctgtttca cgaacagatg gcactgtgga aatttataac ttgtcagcaa actactttca
181 ggagaaattt ttcccaggtc atgagtctcg ggctacagaa gctttgtgct gggcagaagg
241 acagcgactc tttagtgctg ggctcaatgg cgagattatg gagtatgatt tacaggcgtt
301 aaacatcaag tatgctatgg atgcctttgg aggacctatt tggagcatgg ctgccagccc
361 cagtggctct caacttttgg ttggttgtga agatggatct gtgaaactat ttcaaattac
421 cccagacaaa atccagtttg aaagaaattt tgatcggcag aaaagtcgca tcctgagtct
481 cagctggcat ccctctggta cccacattgc agctggttcc atagactaca ttagtgtgtt
541 tgatgtcaaa tcaggcagcg ctgttcataa gatgattgtg gacaggcagt atatgggcgt
601 gtctaagcgg aagtgcatcg tgtggggtgt cgccttcttg tccgatggca ctatcataag
661 tgtggactct gctgggaagg tgcagttctg ggactcagcc actgggacgc ttgtgaagag
721 ccatctcatc gctaatgctg acgtgcagtc cattgctgta gctgaccaag aagacagttt
781 cgtggtgggc acagccgagg gaacagtctt ccattttcag ctggtccctg tgacatctaa
841 cagcagtgag aagcagtggg tgcggacaaa accgttccag catcacactc atgacgtgcg
901 cactgtggcc cacagcccaa cagcgctgat atctggaggc actgacaccc acttagtctt
961 tcgtcctctc atggagaagg tggaagtaaa gaattacgat gccgctctcc gaaaaatcac
1021 ctttccccac cgatgtctca tctcctgttc taaaaagagg cagcttctcc tcttccagtt
1081 tgctcatcac ttagaacttt ggcgactggg atccacagtt gcaacaggca agaatgggga
1141 tactcttcca ctctctaaaa atgcagatca tttactgcac ctaaagacaa agggtcctga
1201 gaacattatc tgtagctgta tctccccatg tggaagttgg atagcctatt ctacagtttc
1261 tcggtttttt ctctatcggc tgaattatga acatgacaac ataagcctca aaagggtttc
1321 caaaatgcca gcattccttc gctctgccct tcagattttg ttttctgaag attcaacaaa
1381 gctctttgta gcatcaaatc aaggagctct gcatattgtt cagctgtcag gaggaagctt
1441 caagcacctg catgctttcc agcctcagtc aggaacagtg gaggccatgt gtcttttggc
1501 agtcagtcca gatgggaatt ggctagctgc atcaggtacc agtgctggag tccatgtcta
1561 caacgtaaaa cagctaaagc ttcactgcac ggtgcctgct tacaatttcc cagtgactgc
1621 tatggctatt gcccccaata ccaacaacct tgtcatcgct cattcggacc agcaggtatt
1681 tgagtacagc atcccagaca aacagtatac agattggagc cggactgtcc agaagcaggg
1741 ctttcaccac ctttggctcc aaagggatac tcctatcaca cacatcagtt ttcatcccaa
1801 gagaccgatg cacatccttc tccatgatgc ctacatgttc tgcatcattg acaagtcatt
1861 gccccttcca aatgacaaaa ccttactcta caatccattt cctcccacga atgaatcaga
1921 tgtcatccgg aggcgcacag ctcatgcttt taaaatttct aagatatata agcctctact
1981 cttcatggat cttttggatg aaagaacact cgtggcagta gaacggcctc tggatgacat
2041 cattgctcag ctcccaccac ccattaaaaa gaagaaattt ggaacctaaa acagggcact
2101 gtctgtgtcc ttccttgaac tgtctaccct gttgcttttc acaaatcatg gtaataaaac
2161 aagttattct tgaaaaaaaa aaaaaaaaaa aaa
//