LOCUS BC009273 2413 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens GM2 ganglioside activator, mRNA (cDNA clone MGC:10462
IMAGE:4053681), complete cds.
ACCESSION BC009273
VERSION BC009273.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2413)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2413)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC009273.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: j Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39995108.
FEATURES Location/Qualifiers
source 1..2413
/db_xref="H-InvDB:HIT000034247"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10462 IMAGE:4053681"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2413
/gene="GM2A"
/gene_synonym="SAP-3"
/db_xref="GeneID:2760"
/db_xref="HGNC:HGNC:4367"
/db_xref="MIM:272750"
CDS 30..611
/gene="GM2A"
/gene_synonym="SAP-3"
/codon_start=1
/product="GM2 ganglioside activator"
/protein_id="AAH09273.1"
/db_xref="GeneID:2760"
/db_xref="HGNC:HGNC:4367"
/db_xref="MIM:272750"
/translation="MQSLMQAPLLIALGLLLAAPAQAHLKKPSQLSSFSWDNCDEGKD
PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDY
IGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELP
SWLTTGNYRIESVLSSSGKRLGCIKIAASLKGI"
BASE COUNT 572 a 619 c 574 g 648 t
ORIGIN
1 gttaactccg ccctgaccca cccttcccga tgcagtccct gatgcaggct cccctcctga
61 tcgccctggg cttgcttctc gcggcccctg cgcaagccca cctgaaaaag ccatcccagc
121 tcagtagctt ttcctgggat aactgtgatg aagggaagga ccctgcggtg atcagaagcc
181 tgactctgga gcctgacccc atcgtcgttc ctggaaatgt gaccctcagt gtcgtgggca
241 gcaccagtgt ccccctgagt tctcctctga aggtggattt agttttggag aaggaggtgg
301 ctggcctctg gatcaagatc ccatgcacag actacattgg cagctgtacc tttgaacact
361 tctgtgatgt gcttgacatg ttaattccta ctggggagcc ctgcccagag cccctgcgta
421 cctatgggct tccttgccac tgtcccttca aagaaggaac ctactcactg cccaagagcg
481 aattcgttgt gcctgacctg gagctgccca gttggctcac caccgggaac taccgcatag
541 agagcgtcct gagcagcagt gggaagcgtc tgggctgcat caagatcgct gcctctctaa
601 agggcatata gcatggcatc tgccacagca gaatggagcg gtgtgaggaa ggtccctttt
661 cctctgtttt gtgtttgcca aggccaaact cccactctct gccccccttt aatccccttt
721 ctacagtgag tccactaccc tcactgaaaa tcattttgta ccacttacat tttaggctgg
781 ggcaagcagc cctgacctaa gggagaatga gttggacagt tcttgatagc ccagggcatc
841 tgctgggctg accacgttac tcatccccgt taacattctc tctaaagagc ctcgttcatt
901 tccaaagcag ttaaggaatg ggaaccagag tgttttagga cctgaagaat ctttatgact
961 ctctctcttt cactcttttt ttttttgtca ctaagttaaa agcgaagtga gagtattaac
1021 gtttttgttc tcctccggcc ccctgttaca atgaaggggc aaaagtattt gctcttagtc
1081 tattcctccc ttaacttctg tgactaattt ttatttcctt tctagatttg cccaattaat
1141 actagggtgc agtgtatcct ggagaggtag ggtgtgtggg ggaggaatcc cttgggggag
1201 atattaggag tgctctgttg tttacaaact caggtacccg cagggcctag caagagactt
1261 aaatgactga taagaaccgt gagaaacatg ttgcttccag gcttgatttc gatttttcgc
1321 tttttttttt tgggacggag tctcgctttg tcaccaggct ggagtgcagt ggtgcaatct
1381 cacctcactg caacctccgc ctcctgggtt caagcaattc tcctgcctca gcctcccaag
1441 tagcttggac tacaggccct gccaccacgc ccggctaatt tgtgtatttt tagtagagat
1501 ggggtttcac catgttggcc aggatggtct cgatctcttg acctcgtgat ccgtccacct
1561 tggccttgca aagcgctgga ttacaggcat gagccactac acccagccga tttttccttt
1621 ttgattaaag atgctattac aatgtaaata tttcttacac agaaagtcac agcacatgtg
1681 cccattgata caaggctgct gaggcctggt ctccagttgg aaatataatt aagggtggca
1741 gggactggag tcagttggag agtgcatagc cagtctgtga agacaactgc cagatactgg
1801 caatactcca gcctggtgac agagtgagac tctgtctcaa aaaaaaagtt tcaatgttta
1861 ctcctagaga agccaaaaat ccagatttgt atatgaaatc ttaccatttt aaaagattgg
1921 cagctaatta tttttttaaa aagctgtgca gtgtgatgtg tcccaaacgg actggctcat
1981 gggtggccac gtcacaacct ctgatctcag accgtgcatg ccttgtcctc ttaagacaac
2041 tcctgtggca ccgtttctcc ctccacaggg ccaaagccat agtgtccggt cccaaggaca
2101 aggctcttcc agtgctagga gaggtatgag cagcctctca cctgtgagct gtggggatca
2161 caaggctgcc tgcctcagtc ttggagtcct gttgggtgaa tgaggcagat gggaaagagc
2221 ctcaccagca gctgcttttg gagcaggggt ccaaggaaga gagggtggcc tcgacatcaa
2281 actgcctgga tttttctacc accctgttac atcataacaa cttctgaaac acacaccagc
2341 cctgagttct gggctcattt gaagcctgga atagcaataa atctttttaa cttgcaaaaa
2401 aaaaaaaaaa aaa
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