LOCUS BC009259 1911 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens homeobox containing 1, mRNA (cDNA clone
IMAGE:3947903), partial cds.
ACCESSION BC009259
VERSION BC009259.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1911)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1911)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC009259.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: i Column: 1.
FEATURES Location/Qualifiers
source 1..1911
/db_xref="H-InvDB:HIT000034237"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3947903"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1911
/gene="HMBOX1"
/gene_synonym="FLJ21616"
/gene_synonym="HNF1LA"
/gene_synonym="PBHNF"
/db_xref="GeneID:79618"
/db_xref="HGNC:HGNC:26137"
CDS <1..1002
/gene="HMBOX1"
/gene_synonym="FLJ21616"
/gene_synonym="HNF1LA"
/gene_synonym="PBHNF"
/codon_start=1
/product="HMBOX1 protein"
/protein_id="AAH09259.2"
/db_xref="GeneID:79618"
/db_xref="HGNC:HGNC:26137"
/translation="GNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQ
NGRENNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIK
EEIKAFLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNP
GATLSMRPAPIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQ
YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIAAILE
SHGIDVQSPGGHSNSDDVDGNDYSEQDTWQVRNGEEEEGRSSEGGREAEKVEEERRI"
BASE COUNT 610 a 420 c 446 g 435 t
ORIGIN
1 gggaatagta ctaacaatgt cccagcatct tcctctacag ctacagcttc cacacagacg
61 cagcattcgg gaatgtcccc gtcacctagc aacagttatg atacttcccc acagccttgc
121 actaccaatc aaaatgggag ggagaataat gagcgattat ctacatccaa tggaaagatg
181 tcaccaactc gctaccatgc aaacagcatg ggtcagaggt catacagttt tgaagcctca
241 gaagaggacc tagatgtaga tgataaagtg gaagaattaa tgaggaggga cagcagtgtg
301 ataaaagagg aaatcaaagc ctttcttgcc aatcggagga tttcccaagc agttgttgca
361 caggtaacag gtatcagtca gagccggatc tctcattggc tgttgcagca gggatcagac
421 ctgagtgaac agaagaaaag agcattttac cgatggtatc aacttgagaa gacaaaccct
481 ggcgctacac taagtatgag accagccccc attccaatag aggaccctga atggagacaa
541 acgcctcccc cagtctctgc cacatctggt actttccgac tgcgacgagg gagtcgattt
601 acctggagaa aggagtgcct ggctgttatg gaaagttact tcaatgagaa tcaataccca
661 gatgaagcaa agagggaaga aattgcaaac gcttgcaatg cagttataca gaagccaggc
721 aaaaagctgt cagatctgga aagagttacc tccctgaaag tatataattg gtttgctaac
781 agaaggaagg agatcaagag gagagccaat attgcagcaa tcctggagag tcatgggata
841 gatgtgcaga gtccaggagg ccactcaaac agtgatgatg tcgacgggaa tgactactct
901 gagcaggata cttggcaagt acgcaatggg gaggaggagg agggaagaag ttcagaggga
961 ggcagagaag cagagaaggt agaagaagag aggaggatct gatccaaaca agatgacagt
1021 acgagccata gtgaccacca agaccccatc tcattagctg tggaaatggc agcagtcaac
1081 cacactatct tggcattggc ccgacaagga gccaacgaaa tcaagacaga ggccctggat
1141 gatgactgat cagggaggtt aaacatgaca agttaactta gtttagacgt agcaccttag
1201 cagactttcc tcggtcctta acatgtgttc ttacagtata acttgcagtt tcttgtatgt
1261 caggtagctg ttagggtctt gttctgtgaa gatggcatgg tgccctcagc ctttgcatat
1321 actatctcag tattaactcc cagtaaataa taaccaacca accaaccaaa cttccctctc
1381 ccagcccccg aggctagaaa atcttgctgc tccgtcttag cattccaaga aagtgcttcc
1441 aggtatttag atagccctca gttctcaaat attagactac gtgtaaaatc ttgggtacct
1501 ttagattctt gtaacactag tctgtactcc cttttccttc cccaagactg ataggatgca
1561 agctgaggtc gtggcacagg aatgacagac accatttggg gagtatccac agagtcaaag
1621 gaacactaga atccccacct cagcgtgagg ataattgatt tccagctgca ataagccgtg
1681 cctcattata gccacactgt ggctagatta tacttctttg ggtgctgtgc taagaatgtc
1741 aatggaaaaa gccgatctca gattttgttt gaagttaaca tgcctgacac agacatcctt
1801 tcctctcaca agctgtgtga cttagtagat aaaatactgc cttctgcctt tgggaccatg
1861 attaaaaaca aagacaaaaa ccaaaagtca ttaaaaaaaa aaaaaaaaaa a
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