LOCUS BC009235 2963 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens hydroxyacyl-Coenzyme A
dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A
hydratase (trifunctional protein), alpha subunit, mRNA (cDNA clone
MGC:1728 IMAGE:2966432), complete cds.
ACCESSION BC009235
VERSION BC009235.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2963)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2963)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC009235.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: m Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059733.
FEATURES Location/Qualifiers
source 1..2963
/db_xref="H-InvDB:HIT000034217"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1728 IMAGE:2966432"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2963
/gene="HADHA"
/gene_synonym="GBP"
/gene_synonym="HADH"
/gene_synonym="LCHAD"
/gene_synonym="MGC1728"
/gene_synonym="MTPA"
/gene_synonym="TP-ALPHA"
/db_xref="GeneID:3030"
/db_xref="HGNC:HGNC:4801"
/db_xref="MIM:600890"
CDS 26..2317
/gene="HADHA"
/gene_synonym="GBP"
/gene_synonym="HADH"
/gene_synonym="LCHAD"
/gene_synonym="MGC1728"
/gene_synonym="MTPA"
/gene_synonym="TP-ALPHA"
/codon_start=1
/product="hydroxyacyl-Coenzyme A
dehydrogenase/3-ketoacyl-Coenzyme A
thiolase/enoyl-Coenzyme A hydratase (trifunctional
protein), alpha subunit"
/protein_id="AAH09235.1"
/db_xref="GeneID:3030"
/db_xref="HGNC:HGNC:4801"
/db_xref="MIM:600890"
/translation="MVACRAIGILSRFSAFRILRSRGYICRNFTGSSALLTRTHINYG
VKGDVAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGA
DINMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRI
ATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLV
DQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKISPKRDKGLVEKLTAYAMTIP
FVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLCESQKFGELVMTK
ESKALMGLYHGQVLCKKNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKGLKTILKDA
TLTALDRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFE
DLSLKHRVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQL
LEIITTEKTSKDTSASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGV
DPKKLDSLTTSFGFPVGAATLVDEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVS
KGFLGRKSGKGFYIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFV
NEAVMCLQEGILATPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKIVDRLKKYEAAY
GKQFTPCQLLADHANSPNKKFYQ"
BASE COUNT 841 a 663 c 770 g 689 t
ORIGIN
1 ccactgctgt cctcttcagc tcaagatggt ggcctgccgg gcgattggca tcctcagccg
61 cttttctgcc ttcaggatcc tccgctcccg aggttatata tgccgcaatt ttacagggtc
121 ttctgctttg ctgaccagaa cccatattaa ctatggagtc aaaggggatg tggcagttgt
181 tcgaattaac tctcccaatt caaaggtaaa tacactgagt aaagagctac attcagagtt
241 ctcagaagtt atgaatgaaa tctgggctag tgatcaaatc agaagtgccg tccttatctc
301 atcaaagcca ggctgcttta ttgcaggtgc tgatatcaac atgttagccg cttgcaagac
361 ccttcaagaa gtaacacagc tatcacaaga agcacagaga atagttgaga aacttgaaaa
421 gtccacaaag cctattgtgg ctgccatcaa tggatcctgc ctgggaggag gacttgaggt
481 tgccatttca tgccaataca gaatagcaac aaaagacaga aaaacagtat taggtacccc
541 tgaagttttg ctgggggcct taccaggagc aggaggcaca caaaggctgc ccaaaatggt
601 gggtgtgcct gctgctttgg acatgatgct gactggtaga agcattcgtg cagacagggc
661 aaagaaaatg ggactggttg accaactggt ggaacccctg ggaccaggac taaaacctcc
721 agaggaacgg acaatagaat acctagaaga agttgcaatt acttttgcca aaggactagc
781 tgataagaag atctctccaa agagagacaa gggattggtg gaaaaattga cagcgtatgc
841 catgactatt ccatttgtca ggcaacaggt ttacaaaaaa gtggaagaaa aagtgcgaaa
901 gcagactaaa ggcctttatc ctgcacctct gaaaataatt gatgtggtaa agactggaat
961 tgagcaaggg agtgatgccg gttatctctg tgaatctcag aaatttggag agcttgtaat
1021 gaccaaagaa tcaaaggcct tgatgggact ctaccatggt caggtcctgt gcaagaagaa
1081 taaatttgga gctccacaga aggatgttaa gcatctggct attcttggtg cagggctgat
1141 gggagcaggc atcgcccaag tctccgtgga taaggggcta aagactatac ttaaagatgc
1201 caccctcact gcgctagacc gaggacagca acaagtgttc aaaggattga atgacaaagt
1261 gaagaagaaa gctctaacat catttgaaag ggattccatc ttcagcaact tgactgggca
1321 gcttgattac caaggttttg aaaaggccga catggtgatt gaagctgtgt ttgaggacct
1381 tagtcttaag cacagagtgc taaaggaagt agaagcggtg attccagatc actgtatctt
1441 tgccagtaac acatctgctc tcccaatcag tgaaatcgct gctgtcagca aaagacctga
1501 gaaggtgatt ggcatgcact acttctctcc cgtggacaag atgcagctgc tggagattat
1561 cacgaccgag aaaacttcca aagacaccag tgcttcagct gtagcagttg gtctcaagca
1621 ggggaaggtc atcattgtgg ttaaggatgg acctggcttc tatactacca ggtgtcttgc
1681 gcccatgatg tctgaagtca tccgaatcct ccaggaagga gttgacccga agaagctgga
1741 ttccctgacc acaagctttg gctttcctgt gggtgccgcc acactggtgg atgaagttgg
1801 tgtggatgta gcgaaacatg tggcggaaga tctgggcaaa gtctttgggg agcggtttgg
1861 aggtggaaac ccagaactgc tgacacagat ggtgtccaag ggcttcctag gtcgtaaatc
1921 tgggaagggc ttttacatct atcaggaggg tgtgaagagg aaggatttga attctgacat
1981 ggatagtatt ttagcgagtc tgaagctgcc tcctaagtct gaagtctcat cagacgaaga
2041 catccagttc cgcctggtga caagatttgt gaatgaggca gtcatgtgcc tgcaagaggg
2101 gatcttggcc acacctgcag agggagacat cggagccgtc tttgggcttg gcttcccgcc
2161 ttgtctggga gggcctttcc gctttgtgga tctgtatggc gcccagaaga tagtggaccg
2221 gctcaagaaa tatgaagctg cctatggaaa acagttcacc ccatgccagc tgctagctga
2281 ccatgctaac agccctaaca agaagttcta ccagtgagca ggcctcatgc ctcgctcagt
2341 cagtgcacta accccagctg ccggcagtgc tggttctcca acagagtggt gtctagattt
2401 atcagagtaa cgagaagaca aactccggca ctgggtttgc tccctgatta aagtgccttc
2461 agccaagacc atctctccct cctggtgaag tgtgacttcg aattagtttg cacttcctat
2521 tggaaggtag agcccactgc tcattgtata agccccgagg cctagagtgg cagccaagag
2581 ccatctgaag ccacctctct gcctgttcct cccaagaggc cagggtggcc aggggtggtg
2641 agggcagttc tgcacccagc caaacacata acaataaaaa ccaaactctg tgtcagcatc
2701 tttgcccttc tggtttaaac gcctccttca aaaagcaatc tggaagaaag ccctgtgctt
2761 tgggggagta agaatgtgtg tgcagaattc taggcagcac cttagggagg gactgggatg
2821 agagaaagtg ggacctggtg ggctcaacca cacacacctg tctgtgcaga tgctttgccc
2881 aggcttctca ccacggtgta ccgggatatt aaacctcttt ccccagcaaa aaaaaaaaaa
2941 aaaaaaaaaa aaaaaaaaaa aaa
//