LOCUS BC009040 1622 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens basigin (Ok blood group), mRNA (cDNA clone MGC:17700
IMAGE:3867352), complete cds.
ACCESSION BC009040
VERSION BC009040.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1622)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1622)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC009040.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: g Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38372918.
FEATURES Location/Qualifiers
source 1..1622
/db_xref="H-InvDB:HIT000034150"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17700 IMAGE:3867352"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1622
/gene="BSG"
/gene_synonym="5F7"
/gene_synonym="CD147"
/gene_synonym="EMMPRIN"
/gene_synonym="M6"
/gene_synonym="TCSF"
/db_xref="GeneID:682"
/db_xref="HGNC:HGNC:1116"
/db_xref="MIM:109480"
CDS 45..854
/gene="BSG"
/gene_synonym="5F7"
/gene_synonym="CD147"
/gene_synonym="EMMPRIN"
/gene_synonym="M6"
/gene_synonym="TCSF"
/codon_start=1
/product="basigin (Ok blood group)"
/protein_id="AAH09040.1"
/db_xref="GeneID:682"
/db_xref="HGNC:HGNC:1116"
/db_xref="MIM:109480"
/translation="MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLN
DSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLH
GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV
SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAE
VLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS"
BASE COUNT 326 a 517 c 463 g 316 t
ORIGIN
1 gcggcagcgg ttggaggttg taggaccggc gaggaatagg aatcatggcg gctgcgctgt
61 tcgtgctgct gggattcgcg ctgctgggca cccacggagc ctccggggct gccggcacag
121 tcttcactac cgtagaagac cttggctcca agatactcct cacctgctcc ttgaatgaca
181 gcgccacaga ggtcacaggg caccgctggc tgaagggggg cgtggtgctg aaggaggatg
241 cgctgcccgg ccagaaaacg gagttcaagg tggactcgga cgaccagtgg ggagagtact
301 cctgcgtctt cctccccgag cccatgggca cggccaacat ccagctccac gggcctccca
361 gagtgaaggc tgtgaagtcg tcagaacaca tcaacgaggg ggagacggcc atgctggtct
421 gcaagtcaga gtccgtgcca cctgtcactg actgggcctg gtacaagatc actgactctg
481 aggacaaggc cctcatgaac ggctccgaga gcaggttctt cgtgagttcc tcgcagggcc
541 ggtcagagct acacattgag aacctgaaca tggaggccga ccccggccag taccggtgca
601 acggcaccag ctccaagggc tccgaccagg ccatcatcac gctccgcgtg cgcagccacc
661 tggccgccct ctggcccttc ctgggcatcg tggctgaggt gctggtgctg gtcaccatca
721 tcttcatcta cgagaagcgc cggaagcccg aggacgtcct ggatgatgac gacgccggct
781 ctgcacccct gaagagcagc gggcagcacc agaatgacaa aggcaagaac gtccgccaga
841 ggaactcttc ctgaggcagg tggcccgagg acgctccctg ctccgcgtct gcgccgccgc
901 cggagtccac tcccagtgct tgcaagattc caagttctca cctcttaaag aaaacccacc
961 ccgtagattc ccatcataca cttccttctt ttttaaaaaa gttgggtttt ctccattcag
1021 gattctgttc cttaggattt tttccttctg aagtgtttca cgagagcccg ggagctgctg
1081 ccctgcggcc ccgtctgtgg ctttcagcct ctgggtctga gtcatggccg ggtgggcggc
1141 acagccttct ccactggccg gagtcagtgc caggtccttg ccctttgtgg aaagtcacag
1201 gtcacacgag gggccccgtg tcctgcctgt ctgaagccaa tgctgtctgg ttgcgccatt
1261 tttgtgcttt tatgtttaat tttatgaggg ccacgggtct gtgttcgact cagcctcagg
1321 gacgactctg acctcttggc cacagaggac tcacttgccc acaccgaggg cgaccccgtc
1381 acagcctcaa gtcactccca agccccctcc ttgtctgtgc atccgggggc agctctggag
1441 ggggtttgct ggggaactgg cgccatcgcc gggactccag aaccgcagaa gcctccccag
1501 ctcacccctg gaggacggcc ggctctctat agcaccaggg ctcacgtggg aacccccctc
1561 ccacccaccg ccacaataaa gatcgccccc acctccaccc tcaaaaaaaa aaaaaaaaaa
1621 aa
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