LOCUS BC008976 1226 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SNF8, ESCRT-II complex subunit, homolog (S.
cerevisiae), mRNA (cDNA clone MGC:9336 IMAGE:3452153), complete
cds.
ACCESSION BC008976
VERSION BC008976.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1226)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1226)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: a Column: 10.
FEATURES Location/Qualifiers
source 1..1226
/db_xref="H-InvDB:HIT000034120"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9336 IMAGE:3452153"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1226
/gene="SNF8"
/gene_synonym="Dot3"
/gene_synonym="EAP30"
/gene_synonym="VPS22"
/db_xref="GeneID:11267"
/db_xref="HGNC:HGNC:17028"
CDS 59..835
/gene="SNF8"
/gene_synonym="Dot3"
/gene_synonym="EAP30"
/gene_synonym="VPS22"
/codon_start=1
/product="SNF8, ESCRT-II complex subunit, homolog (S.
cerevisiae)"
/protein_id="AAH08976.1"
/db_xref="GeneID:11267"
/db_xref="HGNC:HGNC:17028"
/translation="MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFK
TNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGV
QIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGI
IPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLK
EGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP"
BASE COUNT 326 a 275 c 352 g 273 t
ORIGIN
1 ccgggacgtg gagacccggg gtcccggcag ccgggcggcc cgcgggccca gggtggggat
61 gcaccgccgc ggggtgggag ctggcgccat cgccaagaag aaacttgcag aggccaagta
121 taaggagcga gggacggtct tggctgagga ccagctagcc cagatgtcaa agcagttgga
181 catgttcaag accaacctgg aggaatttgc cagcaaacac aagcaggaga tccggaagaa
241 tcctgagttc cgtgtgcagt tccaggacat gtgtgcaacc attggcgtgg atccgctggc
301 ctctggaaaa ggattttggt ctgagatgct gggcgtgggg gacttctatt acgaactagg
361 tgtccaaatt atcgaagtgt gcctggcgct gaagcatcgg aatggaggtc tgataacttt
421 ggaggaacta catcaacagg tgttgaaggg aaggggcaag ttcgcccagg atgtcagtca
481 agatgacctg atcagagcca tcaagaaact aaaggcactt ggcactggct tcggcatcat
541 ccctgtgggc ggcacttacc tcattcagtc tgttccagct gagctcaata tggatcacac
601 cgtggtgctg cagctggcag agaagaatgg ctacgtgact gtcagtgaga tcaaagccag
661 tcttaaatgg gagaccgagc gagcgcggca agtgctggaa cacctgctga aggaagggtt
721 ggcgtggctg gacttacagg ccccagggga ggcccactac tggctgccag ctctcttcac
781 tgacctctac tcccaggaga ttacagctga ggaggccaga gaagccctcc cctgactgca
841 tgtggaaggg cacacagcag caggcaggga ggaggcggag gtggcaaata aacctgggca
901 attttgttta tacaaaaaat agaaaaaaag ttccaagttt ttctttcttc cctcattctt
961 ttatttttga aaagtgcctt cacgttgcat ttttattgga ggaaaacctc gctcgttcag
1021 taagcataat ctgattaaca cagagaacgg caagcacata taaaatgatt tttgtaggtc
1081 atctgcaagt tcatggaaga gctgggccta gaatgtgggt tgtttcctgg cctgtctagt
1141 ctttgtagct gtgagacata gattacagcc tatgctaatt caaacctttt aaataaaatg
1201 ttccttatct caaaaaaaaa aaaaaa
//