LOCUS BC008934 1363 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens claudin 6, mRNA (cDNA clone MGC:2373 IMAGE:2963008),
complete cds.
ACCESSION BC008934
VERSION BC008934.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1363)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1363)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC008934.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: f Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39725680.
FEATURES Location/Qualifiers
source 1..1363
/db_xref="H-InvDB:HIT000034088"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2373 IMAGE:2963008"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1363
/gene="CLDN6"
/db_xref="GeneID:9074"
/db_xref="HGNC:HGNC:2048"
CDS 35..697
/gene="CLDN6"
/codon_start=1
/product="claudin 6"
/protein_id="AAH08934.1"
/db_xref="GeneID:9074"
/db_xref="HGNC:HGNC:2048"
/translation="MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQ
VVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGA
KCTTCVEEKDSKARLVLTSGIVFVISGVLTLIPVCWTAHAVIRDFYNPLVAEAQKREL
GASLYLGWAASGLLLLGGGLLCCTCPSGGSQGPSHYMARYSTSAPAISRGPSEYPTKN
YV"
BASE COUNT 251 a 410 c 367 g 335 t
ORIGIN
1 atctccttcg cagtgcagct ccttcaacct cgccatggcc tctgccggaa tgcagatcct
61 gggagtcgtc ctgacactgc tgggctgggt gaatggcctg gtctcctgtg ccctgcccat
121 gtggaaggtg accgctttca tcggcaacag catcgtggtg gcccaggtgg tgtgggaggg
181 cctgtggatg tcctgcgtgg tgcagagcac cggccagatg cagtgcaagg tgtacgactc
241 actgctggcg ctgccacagg acctgcaggc tgcacgtgcc ctctgtgtca tcgccctcct
301 tgtggccctg ttcggcttgc tggtctacct tgctggggcc aagtgtacca cctgtgtgga
361 ggagaaggat tccaaggccc gcctggtgct cacctctggg attgtctttg tcatctcagg
421 ggtcctgacg ctaatccccg tgtgctggac ggcgcatgcc gtcatccggg acttctataa
481 ccccctggtg gctgaggccc aaaagcggga gctgggggcc tccctctact tgggctgggc
541 ggcctcaggc cttttgttgc tgggtggggg gttgctgtgc tgcacttgcc cctcgggggg
601 gtcccagggc cccagccatt acatggcccg ctactcaaca tctgcccctg ccatctctcg
661 ggggccctct gagtacccta ccaagaatta cgtctgacgt ggaggggaat gggggctccg
721 ctggcgctag agccatccag aagtggcagt gcccaacagc tttgggatgg gttcgtacct
781 tttgtttctg cctcctgcta tttttctttt gactgaggat atttaaaatt catttgaaaa
841 ctgagccaag gtgttgactc agactctcac ttaggctctg ctgtttctca cccttggatg
901 atggagccaa agaggggatg ctttgagatt ctggatcttg acatgcccat cttagaagcc
961 agtcaagcta tggaactaat gcggaggctg cttgctgtgc tggctttgca acaagacaga
1021 ctgtccccaa gagttcctgc tgctgctggg ggctgggctt ccctagatgt cactggacag
1081 ctgcccccca tcctactcag gtctctggag ctcctctctt cacccctgga aaaacaaatg
1141 atctgttaac aaaggactgc ccacctccgg aacttctgac ctctgtttcc tccgtcctga
1201 taagacgtcc accccccagg gccaggtccc agctatgtag acccccgccc ccacctccaa
1261 cactgcaccc ttctgccctg cccccctcgt ctcaccccct ttacactcac atttttatca
1321 aataaagcat gttttgttag tgcaaaaaaa aaaaaaaaaa aaa
//