LOCUS BC008832 1911 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high mobility group AT-hook 1, mRNA (cDNA clone
MGC:12816 IMAGE:4308914), complete cds.
ACCESSION BC008832
VERSION BC008832.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1911)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1911)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008832.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22208980.
FEATURES Location/Qualifiers
source 1..1911
/db_xref="H-InvDB:HIT000034006"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12816 IMAGE:4308914"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1911
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
CDS 203..526
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/codon_start=1
/product="high mobility group AT-hook 1"
/protein_id="AAH08832.1"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
/translation="MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGS
QKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQES
SEEEQ"
BASE COUNT 387 a 654 c 506 g 364 t
ORIGIN
1 ccgagccggg gctatttctg gcgctggcgc ggctccaaga aggcatccgc atttgctacc
61 agcggcggcc gcggcggagc caggccggtc ctcagcgccc agcaccgccg ctcccggcaa
121 cccggagcgc gcaccgcagg ccggcggccg agctcgcgca tcccagccat cactcttcca
181 cctgctcctt agagaaggga agatgagtga gtcgagctcg aagtccagcc agcccttggc
241 ctccaagcag gaaaaggacg gcactgagaa gcggggccgg ggcaggccgc gcaagcagcc
301 tccggtgagt cccgggacag cgctggtagg gagtcagaag gagcccagcg aagtgccaac
361 acctaagaga cctcggggcc gaccaaaggg aagcaaaaac aagggtgctg ccaagacccg
421 gaaaaccacc acaactccag gaaggaaacc aaggggcaga cccaaaaaac tggagaagga
481 ggaagaggag ggcatctcgc aggagtcctc ggaggaggag cagtgaccca tgcgtgccgc
541 ctgctcctca ctggaggagc agcttccttc tgggactgga cagctttgct ccgctcccac
601 cgcccccgcc ccttccccag gcccaccatc accaccgcct ctggccgcca cccccatctt
661 ccacctgtgc cctcaccacc acactacaca gcacaccagc cgctgcaggg ctcccatggg
721 ctgagtgggg agcagttttc ccctggcctc agttcccagc tccccccgcc cacccacgca
781 tacacacatg ccctcctgga caaggctaac atcccactta gccgcaccct gcacctgctg
841 cgtccccact cccttggtgg tggggacatt gctctctggg cttttggttt gggggcgccc
901 tctctgctcc ttcactgttc cctctggctt cccatagtgg ggcctgggag ggttcccctg
961 gccttaaaag gggcccaagc cccatctcat cctggcacgc cctactccac tgccctggca
1021 gcagcaggtg tggccaatgg aggggggtgc tggcccccag gattccccca gccaaactgt
1081 ctttgtcacc acgtggggct cacttttcat ccttccccaa cttccctagt ccccgtacta
1141 ggttggacag cccccttcgg ctacaggaag gcaggagggg tgagtcccct actccctctt
1201 cactgtggcc acagccccct tgccctccgc ctgggatctg agtacatatt gtggtgatgg
1261 agatgcagtc acttattgtc caggtgaggc ccaagagccc tgtggccgcc acctgaggtg
1321 ggctggggct gctcccctaa ccctactttg cttccgccac tcagccattt ccccctcctc
1381 agatggggca ccaataacaa ggagctcacc ctgcccgctc ccaacccccc tcctgctcct
1441 ccctgccccc caaggttctg gttccatttt tcctctgttc acaaactacc tctggacagt
1501 tgtgttgttt tttgttcaat gttccattct tcgacatccg tcattgctgc tgctaccagc
1561 gccaaatgtt catcctcatt gcctcctgtt ctgcccacga tcccctcccc caagatactc
1621 tttgtgggga agaggggctg gggcatggca ggctgggtga ccgactaccc cagtcccagg
1681 gaaggtgggg ccctgcccct aggatgctgc agcagagtga gcaagggggc ccgaatcgac
1741 cataaagggt gtaggggcca cctcctcccc ctgttctgtt ggggaggggt agccatgatt
1801 tgtcccagcc tggggctccc tctctggttt cctatttgca gttacttgaa taaaaaaaat
1861 atccttttct ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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