LOCUS BC008765 2475 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens syndecan 1, mRNA (cDNA clone MGC:1622 IMAGE:3347793),
complete cds.
ACCESSION BC008765
VERSION BC008765.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2475)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2475)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC008765.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: p Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55925657.
FEATURES Location/Qualifiers
source 1..2475
/db_xref="H-InvDB:HIT000033953"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1622 IMAGE:3347793"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2475
/gene="SDC1"
/gene_synonym="CD138"
/gene_synonym="SYND1"
/db_xref="GeneID:6382"
/db_xref="HGNC:HGNC:10658"
/db_xref="MIM:186355"
CDS 244..1176
/gene="SDC1"
/gene_synonym="CD138"
/gene_synonym="SYND1"
/codon_start=1
/product="syndecan 1"
/protein_id="AAH08765.1"
/db_xref="GeneID:6382"
/db_xref="HGNC:HGNC:10658"
/db_xref="MIM:186355"
/translation="MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNF
SGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEG
EAVVLPEVEPGLTAREQEATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPG
HHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGE
NTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLGGVIAVGLVGLIFAVCLVGFMLY
RMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA"
BASE COUNT 497 a 744 c 731 g 503 t
ORIGIN
1 aagggcctgt gggtttatta taaggcggag ctcggcggga gaggtgcggg ccgaatccga
61 gccgagcgga gaggaatccg gcagtagaga gcggactcca gccggcggac cctgcagccc
121 tcgcctggga cagcggcgcg ctgggcaggc gcccaagaga gcatcgagca gcggaacccg
181 cgaagccggc ccgcagccgc gacccgcgca gcctgccgct ctcccgccgc cggtccgggc
241 agcatgaggc gcgcggcgct ctggctctgg ctgtgcgcgc tggcgctgag cctgcagccg
301 gccctgccgc aaattgtggc tactaatttg ccccctgaag atcaagatgg ctctggggat
361 gactctgaca acttctccgg ctcaggtgca ggtgctttgc aagatatcac cttgtcacag
421 cagaccccct ccacttggaa ggacacgcag ctcctgacgg ctattcccac gtctccagaa
481 cccaccggcc tggaggctac agctgcctcc acctccaccc tgccggctgg agaggggccc
541 aaggagggag aggctgtagt cctgccagaa gtggagcctg gcctcaccgc ccgggagcag
601 gaggccaccc cccgacccag ggagaccaca cagctcccga ccactcatca ggcctcaacg
661 accacagcca ccacggccca ggagcccgcc acctcccacc cccacaggga catgcagcct
721 ggccaccatg agacctcaac ccctgcagga cccagccaag ctgaccttca cactccccac
781 acagaggatg gaggtccttc tgccaccgag agggctgctg aggatggagc ctccagtcag
841 ctcccagcag cagagggctc tggggagcag gacttcacct ttgaaacctc gggggagaat
901 acggctgtag tggccgtgga gcctgaccgc cggaaccagt ccccagtgga tcagggggcc
961 acgggggcct cacagggcct cctggacagg aaagaggtgc tgggaggggt cattgccgta
1021 ggcctcgtgg ggctcatctt tgctgtgtgc ctggtgggtt tcatgctgta ccgcatgaag
1081 aagaaggacg aaggcagcta ctccttggag gagccgaaac aagccaacgg cggggcctac
1141 cagaagccca ccaaacagga ggaattctat gcctgacgcg ggagccatgc gccccctccg
1201 ccctgccact cactaggccc ccacttgcct cttccttgaa gaactgcagg ccctggcctc
1261 ccctgccacc aggccacctc cccagcattc cagcccctct ggtcgctcct gcccacggag
1321 tcgtggggtg tgctgggagc tccactctgc ttctctgact tctgcctgga gacttagggc
1381 accaggggtt tctcgcatag gacctttcca ccacagccag cacctggcat cgcaccattc
1441 tgactcggtt tctccaaact gaagcagcct ctccccaggt ccagctctgg aggggagggg
1501 gatccgactg ctttggacct aaatggcctc atgtggctgg aagatcctgc gggtggggct
1561 tggggctcac acacctgtag cacttactgg taggaccaag catcttgggg gggtggccgc
1621 tgagtggcag gggacaggag tccactttgt ttcgtgggga ggtctaatct agatatcgac
1681 ttgtttttgc acatgtttcc tctagttctt tgttcatagc ccagtagacc ttgttacttc
1741 tgaggtaagt taagtaagtt gattcggtat ccccccatct tgcttcccta atctatggtc
1801 gggagacagc atcagggtta agaagacttt tttttttttt ttttttaaac taggagaacc
1861 aaatctggaa gccaaaatgt aggcttagtt tgtgtgttgt ctcttgagtt tgtcgctcat
1921 gtgtgcaaca gggtatggac tatctgtctg gtggccccgt ttctggtggt ctgttggcag
1981 gctggccagt ccaggctgcc gtggggccgc cgcctctttc aagcagtcgt gcctgtgtcc
2041 atgcgctcag ggccatgctg aggcctgggc cgctgccacg ttggagaagc ccgtgtgaga
2101 agtgaatgct gggactcagc cttcagacag agaggactgt agggagggcg gcaggggcct
2161 ggagatcctc ctgcagacca cgcccgtcct gcctgtggcg ccgtctccag gggctgcttc
2221 ctcctggaaa ttgacgaggg gtgtcttggg cagagctggc tctgagcgcc tccatccaag
2281 gccaggttct ccgttagctc ctgtggcccc accctgggcc ctgggctgga atcaggaata
2341 ttttccaaag agtgatagtc ttttgctttt ggcaaaactc tacttaatcc aatgggtttt
2401 tccctgtaca gtagattttc caaatgtaat aaactttaat ataaagtaaa aaaaaaaaaa
2461 aaaaaaaaaa aaaaa
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