LOCUS BC008751 3061 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain 1, (mu/I) large subunit, mRNA (cDNA clone
MGC:3082 IMAGE:3347480), complete cds.
ACCESSION BC008751
VERSION BC008751.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3061)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3061)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008751.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: k Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12408655.
FEATURES Location/Qualifiers
source 1..3061
/db_xref="H-InvDB:HIT000033946"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3082 IMAGE:3347480"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3061
/gene="CAPN1"
/gene_synonym="CANP"
/gene_synonym="CANPL1"
/gene_synonym="muCANP"
/gene_synonym="muCL"
/db_xref="GeneID:823"
/db_xref="HGNC:HGNC:1476"
/db_xref="MIM:114220"
CDS 134..2278
/gene="CAPN1"
/gene_synonym="CANP"
/gene_synonym="CANPL1"
/gene_synonym="muCANP"
/gene_synonym="muCL"
/codon_start=1
/product="calpain 1, (mu/I) large subunit"
/protein_id="AAH08751.1"
/db_xref="GeneID:823"
/db_xref="HGNC:HGNC:1476"
/db_xref="MIM:114220"
/translation="MSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQ
LRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTELLSNPQFIVDGA
TRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQLWQFGEWV
DVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFT
GGVTEWYELRKAPSDLYQIILKALERGSLLGCSIDISSVLDMEAITFKKLVKGHAYSV
TGAKQVNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKMEDGEF
WMSFRDFMREFTRLEICNLTPDALKSRTIRKWNTTLYEGTWRRGSTAGGCRNYPATFW
VNPQFKIRLDETDDPDDYGDRESGCSFVLALMQKHRRRERRFGRDMETIGFAVYEVPP
ELVGQPAVHLKRDFFLANASRARSEQFINLREVSTRFRLPPGEYVVVPSTFEPNKEGD
FVLRFFSEKSAGTVELDDQIQANLPDEQVLSEEEIDENFNALFRQLAGEDMEISVKEL
RTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIF
RKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSEPDLAVDFDNFVCCLVRL
ETMFRFFKTLDTDLDGVVTFDLFKWLQLTMFA"
BASE COUNT 651 a 918 c 912 g 580 t
ORIGIN
1 ggagggcgga gggcggaggg gcggcgggag gagggcgggg aggagcgctc ttcctggttg
61 ggccctgccc tgagctgcca ccgggaagcc agcctcaggg actgcagcga cccccaaaca
121 cccctccccc aggatgtcgg aggagatcat cacgccggtg tactgcactg gggtgtcagc
181 ccaagtgcag aagcagcggg ccagggagct gggcctgggc cgccatgaga atgccatcaa
241 gtacctgggc caggattatg agcagctgcg ggtgcgatgc ctgcagagtg ggaccctctt
301 ccgtgatgag gccttccccc cggtacccca gagcctgggt tacaaggacc tgggtcccaa
361 ttcctccaag acctatggca tcaagtggaa gcgtcccacg gaactgctgt caaaccccca
421 gttcattgtg gatggagcta cccgcacaga catctgccag ggagcactgg gggactgctg
481 gctcttggcg gccatcgcct ccctcactct caacgacacc ctcctgcacc gagtggttcc
541 gcacggccag agcttccaga atggctatgc cggcatcttc catttccagc tgtggcaatt
601 tggggagtgg gtggacgtgg tcgtggatga cctgctgccc atcaaggacg ggaagctagt
661 gttcgtgcac tctgccgaag gcaacgagtt ctggagcgcc ctgcttgaga aggcctatgc
721 caaggtaaat ggcagctacg aggccctgtc agggggcagc acctcagagg gctttgagga
781 cttcacaggc ggggttaccg agtggtacga gttgcgcaag gctcccagtg acctctacca
841 gatcatcctc aaggcgctgg agcggggctc cctgctgggc tgctccatag acatctccag
901 cgttctagac atggaggcca tcactttcaa gaagttggtg aagggccatg cctactctgt
961 gaccggggcc aagcaggtga actaccgagg ccaggtggtg agcctgatcc ggatgcggaa
1021 cccctggggc gaggtggagt ggacgggagc ctggagcgac agctcctcag agtggaacaa
1081 cgtggaccca tatgaacggg accagctccg ggtcaagatg gaggacgggg agttctggat
1141 gtcattccga gacttcatgc gggagttcac ccgcctggag atctgcaacc tcacacccga
1201 cgccctcaag agccggacca tccgcaaatg gaacaccaca ctctacgaag gcacctggcg
1261 gcgggggagc accgcggggg gctgccgaaa ctacccagcc accttctggg tgaaccctca
1321 gttcaagatc cggctggatg agacggatga cccggacgac tacggggacc gcgagtcagg
1381 ctgcagcttc gtgctcgccc ttatgcagaa gcaccgtcgc cgcgagcgcc gcttcggccg
1441 cgacatggag actattggct tcgcggtcta cgaggtccct ccggagctgg tgggccagcc
1501 ggccgtacac ttgaagcgtg acttcttcct ggccaatgcg tctcgggcgc gctcagagca
1561 gttcatcaac ctgcgagagg tcagcacccg cttccgcctg ccacccgggg agtatgtggt
1621 ggtgccctcc accttcgagc ccaacaagga gggcgacttc gtgctgcgct tcttctcaga
1681 gaagagtgct gggactgtgg agctggatga ccagatccag gccaatctcc ccgatgagca
1741 agtgctctca gaagaggaga ttgacgagaa cttcaatgcc ctcttcaggc agctggcagg
1801 ggaggacatg gagatcagcg tgaaggagtt gcggacaatc ctcaatagga tcatcagcaa
1861 acacaaagac ctgcggacca agggcttcag cctagagtcg tgccgcagca tggtgaacct
1921 catggatcgt gatggcaatg ggaagctggg cctggtggag ttcaacatcc tgtggaaccg
1981 catccggaat tacctgtcca tcttccggaa gtttgacctg gacaagtcgg gcagcatgag
2041 tgcctacgag atgcggatgg ccattgagtc ggcaggcttc aagctcaaca agaagctgta
2101 cgagctcatc atcacccgct actcggagcc cgacctggcg gtcgactttg acaatttcgt
2161 ttgctgcctg gtgcggctag agaccatgtt ccgatttttc aaaactctgg acacagatct
2221 ggatggagtt gtgacctttg acttgtttaa gtggttgcag ctgaccatgt ttgcatgagg
2281 cagggactcg gtcccccttg ccgtgctccc ctccctcctc gtctgccaag cctcgcctcc
2341 taccacacca caccaggcca ccccagctgc aagtgccttc cttggagcag agaggcagcc
2401 tcgtcctcct gtcccctctc ctcccagcca ccatcgttca tctgctccgg gcagaactgt
2461 gtggcccctg cctgtgccag ccatgggctc gggatggact ccctgggccc cacccattgc
2521 caagccagga aggcagcttt cgcttgttcc tgcctcggga cagccccggg tttccccagc
2581 atcctgatgt gtcccctctc cccacttcag aggccaccca ctcagcacca ccggcctggc
2641 cttgcctgca gactataaac tataaccact agctcgacac agtctgcagt ccaggcgtgt
2701 ggagccgcct cccggctcgg ggaggccccg gggctgggaa cgcctgtgcc ttcctgcgcc
2761 gaagccaacg ccccctctgt ccttccctgg ccctgctgcc gaccaggagc tgcccagcct
2821 gtgggcggtc ggccttccct ccttcgctcc ttttttatat tagtgatttt aaaggggact
2881 cttcagggac ttgtgtactg gttatggggg tgccagaggc actaggcttg gggtggggag
2941 gtcccgtgtt ccatatagag gaaccccaaa taataaaagg ccccacatct gtctgtgaaa
3001 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3061 a
//