LOCUS BC008732 2058 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans),
mRNA (cDNA clone MGC:706 IMAGE:3162330), complete cds.
ACCESSION BC008732
VERSION BC008732.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2058)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2058)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008732.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: m Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705786.
FEATURES Location/Qualifiers
source 1..2058
/db_xref="H-InvDB:HIT000033930"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:706 IMAGE:3162330"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2058
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
CDS 157..900
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/codon_start=1
/product="anterior pharynx defective 1 homolog A (C.
elegans)"
/protein_id="AAH08732.1"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
/translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV
SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA
SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS
AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY
AVTVSMGLWAFITAGGSLRSIQRSLLCKD"
BASE COUNT 377 a 571 c 542 g 568 t
ORIGIN
1 gttccccccc ttccccttcc ccggggtctg ggggtgacat tgcaccgcgc ccctcgtggg
61 gtcgcgttgc caccccacgc ggactcccca gctggcgcgc ccctcccatt tgcctgtcct
121 ggtcaggccc ccacccccct tcccacctga ccagccatgg gggctgcggt gtttttcggc
181 tgcactttcg tcgcgttcgg cccggccttc gcgcttttct tgatcactgt ggctggggac
241 ccgcttcgcg ttatcatcct ggtcgcaggg gcatttttct ggctggtctc cctgctcctg
301 gcctctgtgg tctggttcat cttggtccat gtgaccgacc ggtcagatgc ccggctccag
361 tacggcctcc tgatttttgg tgctgctgtc tctgtccttc tacaggaggt gttccgcttt
421 gcctactaca agctgcttaa gaaggcagat gaggggttag catcgctgag tgaggacgga
481 agatcaccca tctccatccg ccagatggcc tatgtttctg gtctctcctt cggtatcatc
541 agtggtgtct tctctgttat caatattttg gctgatgcac ttgggccagg tgtggttggg
601 atccatggag actcacccta ttacttcctg acttcagcct ttctgacagc agccattatc
661 ctgctccata ccttttgggg agttgtgttc tttgatgcct gtgagaggag acggtactgg
721 gctttgggcc tggtggttgg gagtcaccta ctgacatcgg gactgacatt cctgaacccc
781 tggtatgagg ccagcctgct gcccatctat gcagtcactg tttccatggg gctctgggcc
841 ttcatcacag ctggagggtc cctccgaagt attcagcgca gcctcttgtg taaggactga
901 ctacctggac tgatcgcctg acagatccca cctgcctgtc cactgcccat gactgagccc
961 agccccagcc cgggtccatt gcccacattc tctgtctcct tctcgtcggt ctaccccact
1021 acctccaggg ttttgctttg tccttttgtg accgttagtc tctaagcttt accaggagca
1081 gcctgggttc agccagtcag tgactggtgg gtttgaatct gcacttatcc ccaccacctg
1141 gggaccccct tgttgtgtcc aggactcccc ctgtgtcagt gctctgctct caccctgccc
1201 aagactcacc tcccttcccc tctgcaggcc gacggcagga ggacagtcgg gtgatggtgt
1261 attctgccct gcgcatccca cccgaggact gagggaacct aggggggacc cctgggcctg
1321 gggtgccctc ctgatgtcct cgccctgtat ttctccatct ccagttctgg acagtgcagg
1381 ttgccaagaa aagggaccta gtttagccat tgccctggag atgaaattaa tggaggctca
1441 aggatagatg agctctgagt ttctcagtac tccctcaaga ctggacatct tggtcttttt
1501 ctcaggcctg agggggaacc atttttggtg tgataaatac cctaaactgc ctttttttct
1561 tttttgaggt ggggggaggg aggaggtata ttggaactct tctaacctcc ttgggctata
1621 ttttctctcc tcgagttgct cctcatggct gggctcattt cggtcccttt ctccttggtc
1681 ccagaccttg ggggaaagga aggaagtgca tgtttgggaa ctggcattac tggaactaat
1741 ggttttaacc tccttaacca ccagcatccc tcctctcccc aaggtgaagt ggagggtgct
1801 gtggtgagct ggccactcca gagctgcagt gccactggag gagtcagact accatgacat
1861 cgtagggaag gaggggagat ttttttgtag tttttaattg gggtgtggga ggggcgggga
1921 ggttttctat aaactgtatc attttctgct gagggtggag tgtcccatcc ttttaatcaa
1981 ggtgattgtg attttgacta ataaaaaaga atttgtaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaaaa aaaaaaaa
//