LOCUS BC008611 1436 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens major histocompatibility complex, class I, A, mRNA
(cDNA clone MGC:17191 IMAGE:4157200), complete cds.
ACCESSION BC008611
VERSION BC008611.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1436)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1436)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1436
/db_xref="H-InvDB:HIT000033861"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17191 IMAGE:4157200"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1436
/gene="HLA-A"
/db_xref="GeneID:3105"
/db_xref="MIM:142800"
CDS 6..1103
/gene="HLA-A"
/codon_start=1
/product="HLA-A protein"
/protein_id="AAH08611.1"
/db_xref="GeneID:3105"
/db_xref="MIM:142800"
/translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEP
RFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESL
RIALRYYNQSEDGSHTIQRMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAA
DMAAQITQRKWETAHEAEQWRAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAV
SDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSG
QEQRYTCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRR
KSSDRKGGSYSQAASSDSAQGSDMSLTACKV"
misc_feature 78..614
/gene="HLA-A"
/note="MHC_I; Region: Class I Histocompatibility antigen,
domains alpha 1 and 2"
/db_xref="CDD:pfam00129"
misc_feature 669..884
/gene="HLA-A"
/note="IGc1; Region: Immunoglobulin C-Type"
/db_xref="CDD:smart00407"
BASE COUNT 295 a 420 c 447 g 274 t
ORIGIN
1 cgaggatggc cgtcatggcg ccccgaaccc tcgtcctgct actctcgggg gccctggccc
61 tgacccagac ctgggcgggc tcccactcca tgaggtattt ctacacctcc gtgtcccggc
121 ccggccgcgg ggagccccgc ttcatcgccg tgggctacgt ggacgacacg cagttcgtgc
181 ggttcgacag cgacgccgcg agccagagga tggagccgcg ggcgccgtgg atagagcagg
241 aggggccgga gtattgggac cggaacacac ggaatgtgaa ggcccactca cagactgacc
301 gagagagcct gcggatcgcg ctccgctact acaaccagag cgaggacggt tctcacacca
361 tccagaggat gtatggctgc gacgtggggc cggacgggcg cttcctccgc gggtaccagc
421 aggacgctta cgacggcaag gattacatcg ccctgaacga ggacctgcgc tcttggaccg
481 cggcggacat ggcggctcag atcacccagc gcaagtggga gacggcccat gaggcggagc
541 agtggagagc ctacctggag ggccggtgcg tggagtggct ccgcagatac ctggagaacg
601 ggaaggagac gctgcagcgc acggacgccc ccaagacgca tatgactcac cacgctgtct
661 ctgaccatga ggccaccctg aggtgctggg ccctgagctt ctaccctgcg gagatcacac
721 tgacctggca gcgggatggg gaggaccaga cccaggacac ggagctcgtg gagaccaggc
781 ctgcagggga tgggaccttc cagaagtggg cgtctgtggt ggtgccttct ggacaggagc
841 agagatacac ctgccatgtg cagcatgagg gtctgcccaa gcccctcacc ctgagatggg
901 agccgtcttc ccagcccacc atccccatcg tgggcatcat tgctggcctg gttctctttg
961 gagctgtgat cgctggagct gtggtcgctg ctgtgatgtg gaggaggaag agctcagata
1021 gaaaaggagg gagctactct caggctgcaa gcagtgacag tgcccagggc tctgatatgt
1081 ctctcacagc ttgtaaagtg tgagacagct gccttgtgtg ggactgagag gcaagatttg
1141 ttcctgccct tccctttgtg acttgaagaa ccctgacttt gtttctgcaa aggcacctgc
1201 atgtgtctgt gttcttgtag gcataatgtg aggaggtggg gagaccaccc cacccccatg
1261 tccaccatga ccctcttccc acgctgacct gtgctccctc cccaatcatc tttcctgttc
1321 cagagaggtg gggctgaggt gtctccatct ctgcctcaac ttcatggtgc actgagctgt
1381 aactttttcc ttccctatta aaattagaac ctgagtataa aaaaaaaaaa aaaaaa
//