LOCUS BC008586 2846 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 40, mRNA (cDNA clone
MGC:16864 IMAGE:2900193), complete cds.
ACCESSION BC008586
VERSION BC008586.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2846)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2846)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: a Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361632.
FEATURES Location/Qualifiers
source 1..2846
/db_xref="H-InvDB:HIT000033848"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16864 IMAGE:2900193"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2846
/gene="LRRC40"
/gene_synonym="dJ677H15.1"
/gene_synonym="FLJ20331"
/gene_synonym="RP4-677H15.1"
/db_xref="GeneID:55631"
/db_xref="HGNC:HGNC:26004"
CDS 37..1845
/gene="LRRC40"
/gene_synonym="dJ677H15.1"
/gene_synonym="FLJ20331"
/gene_synonym="RP4-677H15.1"
/codon_start=1
/product="leucine rich repeat containing 40"
/protein_id="AAH08586.1"
/db_xref="GeneID:55631"
/db_xref="HGNC:HGNC:26004"
/translation="MSRLKRIAGQDLRAGFKAGGRDCGTSVPQGLLKAARKSGQLNLS
GRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLR
LLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQH
NELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELKSLPAEINR
MKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQ
IEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNL
HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTLPSESR
VNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVELKEM
VSDVDLSFNKLSFISLELCVLQKLTFLDLRNNFLNSLPEEMESLVRLQTINLSFNRFK
MLPEVLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIPPELGNCVN
LRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIPT"
BASE COUNT 944 a 471 c 512 g 919 t
ORIGIN
1 ggtggggctg cagcttctgg acctaggact ttgaacatgt cgcgcctgaa gcggatagcg
61 gggcaggatc tccgcgctgg tttcaaagca ggtggaagag actgcggtac ctcggtaccc
121 caagggctgt tgaaggcagc gaggaagagc ggccagttaa acctgtcggg tagaaacctc
181 agtgaagtgc cgcagtgtgt ctggagaata aatgtggata tccctgagga agctaatcag
241 aatctttcgt ttggtgctac tgaaagatgg tgggagcaga cagatttgac caaactaata
301 atatcaaaca ataaacttca gtcacttaca gatgacctgc gactcttgcc tgcactgact
361 gttcttgata tacatgataa tcagttgaca tcccttcctt ctgctataag agagctagaa
421 aatcttcaga aacttaatgt cagccataat aaactgaaaa tactccctga agaaattaca
481 aacctaagaa acctgaagtg cctgtatctc cagcataatg aattaacctg catatcagag
541 ggatttgaac aactttccaa tttagaagat ttagatcttt caaacaatca tcttacaact
601 gttcctgcta gtttttcttc tctgtccagt ctggtgcgac tcaatctttc tagtaatgaa
661 ctgaagagtt tgccagcaga aataaataga atgaaaaggt tgaagcattt ggattgtaat
721 tcaaatctct tggaaactat acctcctgaa ttggctggca tggaatcact agaattgctt
781 tatttgcgga ggaataaatt acgttttcta ccagaatttc cttcttgtag tctattgaag
841 gaattgcacg taggtgaaaa ccagattgaa atgttagagg cagaacatct taaacatctg
901 aattcaattc ttgtgctaga cctgagggat aacaagttaa aatctgttcc agatgaaatt
961 atactactac ggtccttgga aaggcttgac ctaagcaaca atgatattag tagtcttccc
1021 tattcattgg ggaaccttca tttgaaattt ttggcattag aaggaaatcc tttgagaaca
1081 attcgaagag aaattataag taaaggaaca caagaagtcc taaaatatct acgaagcaag
1141 atcaaagatg atggacctag ccaaagtgag tctgctactg agactgccat gacactacca
1201 agtgaatcca gagtcaatat acatgccatc attacattaa aaatattaga ctatagtgat
1261 aaacaagcaa ctttgattcc tgatgaggtg tttgatgcag taaaaagcaa catcgtcact
1321 tctattaact tcagtaagaa tcaactatgt gaaattccaa aaaggatggt agaactgaag
1381 gaaatggttt ctgatgtcga tctcagtttt aataaacttt cctttatatc cttggagtta
1441 tgtgtgcttc agaaattgac ttttttagat ctcaggaaca attttttaaa ttctttgcca
1501 gaagaaatgg aatcactggt aagactgcaa acgatcaatc tttcctttaa taggtttaaa
1561 atgctacctg aagttctata tcgtatcttc acacttgaaa caattctgat tagtaataat
1621 caggttggat ctgtggaccc tcagaaaatg aagatgatgg aaaatctgac cacgttggac
1681 cttcaaaata atgacctctt acaaattcca ccagagctcg gtaattgtgt aaacttaaga
1741 acattactac tggatggaaa tccattccga gttcctcgag cagccatatt aatgaaagga
1801 acagctgcta tacttgaata tttgagagac cgaattccta cttaacatgg agttgcttta
1861 taacccttgt catgtattat taaccctggt taattctaag gaggatgtaa catttgtttt
1921 agtatcatct taaaaggtga ttattgtaat tgatcttgta gtttcccagt atcacctacc
1981 tgttggtata attagcctgg gccatattca ctgccagtaa atatttttac atttttattt
2041 aagatttttg taaggtgttg tatacatttg taatggtgat aaccacaatg tgttcataca
2101 tttgttctaa atgttttgct tatgatttat cctgctaact ttcattttct tatagcaagc
2161 agttttttca aaaatgaatt tttatttaat gtggttcagt attataataa caaagcattt
2221 ttgtagaact ggtttttttt ctcatttatt tttgtattcc atacaatgtg accaattgac
2281 ttgaatatga ctagccagtt tctatgtttt tgttagatat aaaattaaat cgaattttgt
2341 tgaatactgt tctttggcat ttaaaaaata agaccttctt atcttgggcc acatgtcaaa
2401 agaaaaagga aacaaaaata tattaaaaat aagacttttc attacccatg ataggacttt
2461 tgtgatatgg ctaatctcag tacacatttc aacttaaaac ctttttattt acagcaccat
2521 aattttaaaa tttacttgca atcttggtaa gactaaactt gcagtgtttt tctaaaaggg
2581 aatttgatag gtaaacttga tttaataaaa attaaatatc atttttgttt acaccaaaat
2641 tatcagaagt aggttgatta gtcattataa cacttaccat atgattctat taagaagtca
2701 attcagtagc atgtatatca atttatatag ataggtagat agcttttgga tgattgaggc
2761 atgcttatat tatgaaaaaa attgctaata aagataaata ctacatgttc agaataaaag
2821 ttacattttt caaaaaaaaa aaaaaa
//