LOCUS BC008444 1224 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 3, mRNA (cDNA clone MGC:14662
IMAGE:4102735), complete cds.
ACCESSION BC008444
VERSION BC008444.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1224)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1224)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: l Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111040.
FEATURES Location/Qualifiers
source 1..1224
/db_xref="H-InvDB:HIT000033796"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14662 IMAGE:4102735"
/tissue_type="Brain, glioblastoma"
/clone_lib="NIH_MGC_57"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1224
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
CDS 98..586
/gene="SNX3"
/gene_synonym="MGC17570"
/gene_synonym="SDP3"
/gene_synonym="SNX3A"
/codon_start=1
/product="sorting nexin 3"
/protein_id="AAH08444.1"
/db_xref="GeneID:8724"
/db_xref="HGNC:HGNC:11174"
/db_xref="MIM:605930"
/translation="MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRG
RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLP
FRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR
HA"
BASE COUNT 371 a 254 c 267 g 332 t
ORIGIN
1 agccccgtgt ccccacggcg ggcagcagcg gcggcggcgg cggctgaacg cggagggggc
61 ggagggagcc cgcggcggcg gcagcagcta cagcgaaatg gcggagaccg tggctgacac
121 ccggcggctg atcaccaagc cgcagaacct gaatgacgcc tacggacccc ccagcaactt
181 cctcgagatc gatgtgagca acccgcaaac ggtgggggtc ggccggggcc gcttcaccac
241 ttacgaaatc agggtcaaga caaatcttcc tattttcaag ctgaaagaat ctactgttag
301 aagaagatac agtgactttg aatggctgcg aagtgaatta gaaagagaga gcaaggtcgt
361 agttcccccg ctccctggga aagcgttttt gcgtcagctt ccttttagag gagatgatgg
421 aatatttgat gacaatttta ttgaggaaag aaaacaaggg ctggagcagt ttataaacaa
481 ggtcgctggt catcctctgg cacagaacga acgttgtctt cacatgtttt tacaagatga
541 aataatagat aaaagctata ctccatctaa aataagacat gcctgaaatt tggcaagaag
601 gggcaaaaac gtgactatta atgattgata agcaccagtg aagaagttct aacttttagc
661 atgctgcaca gaaactggta taacatgcct tcagtatact aacactcata tgctcagttt
721 tgttttgttt tggcagttga caagaagtta atttgcttta gtaaaaatcc ctcattccag
781 cctttctata taaatagctc tttcttgctg ttttaatgtg gtgcacacta tagcctcaca
841 aacctgttat tccagtgtaa tctgcagtgt cgtaactaaa gttactggct tggtcttatt
901 tgcacagttt ttgcgtcttg tttgcttctt gcatctgatt aactagaata tttctctttc
961 ccccttttaa tttgtgatgt cacttgaccc catttatgtg taggagcact acaccattgg
1021 tttccaatac tgcacacata agatacatac ttgtgtgcag aaagtatctt cctccaggct
1081 tgtaataccc ttcacatgga agattaatga gggaaatctt tatattctgt ataaaaacaa
1141 aagcaaattt atatactaaa atcatttgtc taaaaattta agttgttttc aaataaaaaa
1201 aaaaaaaaaa aaaaaaaaaa aaaa
//