LOCUS BC008417 749 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens interferon induced transmembrane protein 3 (1-8U),
mRNA (cDNA clone MGC:14565 IMAGE:4075453), complete cds.
ACCESSION BC008417
VERSION BC008417.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 749)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 749)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: o Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..749
/db_xref="H-InvDB:HIT000033777"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14565 IMAGE:4075453"
/tissue_type="Brain, glioblastoma"
/clone_lib="NIH_MGC_57"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..749
/gene="IFITM3"
/gene_synonym="1-8U"
/db_xref="GeneID:10410"
/db_xref="HGNC:HGNC:5414"
/db_xref="MIM:605579"
CDS 45..446
/gene="IFITM3"
/gene_synonym="1-8U"
/codon_start=1
/product="interferon induced transmembrane protein 3
(1-8U)"
/protein_id="AAH08417.1"
/db_xref="GeneID:10410"
/db_xref="HGNC:HGNC:5414"
/db_xref="MIM:605579"
/translation="MNQTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTST
VIHIRSETSVPDHVVWSLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYAST
AKCLNIWALILGILMTILLIVIPVLIFQAYG"
BASE COUNT 264 a 214 c 137 g 134 t
ORIGIN
1 aaccatccca gtaacccgac cgccgctggt cttcgctgga caccatgaat caaactgtcc
61 aaaccttctt ctctcctgtc aacagcggcc agccccccaa ctatgagatg ctcaaggagg
121 agcacgaggt ggctgtgctg ggggcgcccc acaaccctgc tcccccgacg tccaccgtga
181 tccacatccg cagcgagacc tccgtgcccg accatgtcgt ctggtccctg ttcaacaccc
241 tcttcatgaa cccctgctgc ctgggcttca tagcattcgc ctactccgtg aagtctaggg
301 acaggaagat ggttggcgac gtgaccgggg cccaggccta tgcctccacc gccaagtgcc
361 tgaacatctg ggccctgatt ctgggcatcc tcatgaccat tctgctcatc gtcatcccag
421 tgctgatctt ccaggcctat ggatagatca ggaggcatca ctgagaccag gagctctgcc
481 catgacctgt atcccacgta ctccaacttc cattcctcgc cctgcccccg gagccgagtc
541 ctgtatcagc cctttatcct cacacgcttt tctacaatgg cattcaataa agtgcacgtg
601 tttctgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
661 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
721 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//